DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VLSSS
Uniprot ID:
Q8N442
Source protein:
Translation factor GUF1, mitochondrial
Source gene:
GUF1
Class:
DEG_SPOP_SBC_1
Location:
437:441
E3 ligase:
SPOP
DEGRON score:
0.5017
ASA_SCORE:
62.76
COIL:
0.581
CONS_SCORE:
0.2986
DSS_SCORE:
0.3145
HELIX:
0.0132
FCONS_SCORE:
0.6498
RIG_SCORE:
0.7846
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K435T
TCGA-B5-A11E
UCEC
TCGA
VLSSS
DEG_SPOP_SBC_1
0.2778
p.K435T
DO41644
UCEC
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.P433S
TCGA-DA-A960
SKCM
TCGA
VLSSS
DEG_SPOP_SBC_1
0.2222
p.P433S
DO219482
SKCM
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2222
p.T429I
TCGA-IB-7651
PAAD
TCGA
VLSSS
DEG_SPOP_SBC_1
0.1111
p.T429I
DO46657
PAAD
ICGC
VLSSS
DEG_SPOP_SBC_1
0.1111
p.A436S
DO229028
LICA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.3056
p.V437L
DO229026
LICA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.6765
p.R448K
SIDM01146
Gastric Carcinoma
GDSC
VLSSS
DEG_SPOP_SBC_1
0.1389
p.R448K
ACH-000932
Gastric Cancer
CCLE
VLSSS
DEG_SPOP_SBC_1
0.1389
p.R448K
NCI-SNU-1
stomach
COSMIC
VLSSS
DEG_SPOP_SBC_1
0.1389
p.E449G
SIDM01173
Rhabdomyosarcoma
GDSC
VLSSS
DEG_SPOP_SBC_1
0.1111
p.E449G
TE-441-T
soft_tissue
COSMIC
VLSSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with GUF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00182
Galectin-9
DEG_SPOP_SBC_1
37:41
VLSSS
SPOP
0.6739
More...
O00268
Transcription initiation factor TFIID subunit 4
DEG_SPOP_SBC_1
697:701
VLSSS
SPOP
0.7112
More...
O75113
NEDD4-binding protein 1
DEG_SPOP_SBC_1
254:258
VLSSS
SPOP
0.9995
More...
P19484
Transcription factor EB
DEG_SPOP_SBC_1
130:134
VLSSS
SPOP
0.9904
More...
P25054
Adenomatous polyposis coli protein
DEG_SPOP_SBC_1
291:295
VLSSS
SPOP
0.9986
More...
P98175
RNA-binding protein 10
DEG_SPOP_SBC_1
325:329
VLSSS
SPOP
0.7807
More...
Q07890
Son of sevenless homolog 2
DEG_SPOP_SBC_1
1276:1280
VLSSS
SPOP
0.9839
More...
Q14671
Pumilio homolog 1
DEG_SPOP_SBC_1
225:229
VLSSS
SPOP
0.9888
More...
Q15149
Plectin
DEG_SPOP_SBC_1
978:982
VLSSS
SPOP
0.6246
More...
Q15572
TATA box-binding protein-associated factor RNA polymerase I subunit C
DEG_SPOP_SBC_1
854:858
VLSSS
SPOP
0.893
More...
Q6IAA8
Ragulator complex protein LAMTOR1
DEG_SPOP_SBC_1
94:98
VLSSS
SPOP
0.5049
More...
Q6UUV7
CREB-regulated transcription coactivator 3
DEG_SPOP_SBC_1
341:345
VLSSS
SPOP
0.9871
More...
Q86WP2
Vasculin
DEG_SPOP_SBC_1
377:381
VLSSS
SPOP
0.9365
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
225:229
VLSSS
SPOP
0.993
More...
Q8TB72
Pumilio homolog 2
DEG_SPOP_SBC_1
98:102
VLSSS
SPOP
0.9847
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
570:574
VLSSS
SPOP
0.9598
More...
Q8WUI4
Histone deacetylase 7
DEG_SPOP_SBC_1
505:509
VLSSS
SPOP
0.9515
More...
Q96EB6
NAD-dependent protein deacetylase sirtuin-1
DEG_SPOP_SBC_1
665:669
VLSSS
SPOP
0.888
More...
Q96IT1
Zinc finger protein 496
DEG_SPOP_SBC_1
356:360
VLSSS
SPOP
0.6662
More...
Q96P47
Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3
DEG_SPOP_SBC_1
526:530
VLSSS
SPOP
0.911
More...
Q96QF0
Rab-3A-interacting protein
DEG_SPOP_SBC_1
259:263
VLSSS
SPOP
0.9939
More...
Q9H329
Band 4.1-like protein 4B
DEG_SPOP_SBC_1
477:481
VLSSS
SPOP
0.9088
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
1894:1898
VLSSS
SPOP
0.9125
More...
Q9NS91
E3 ubiquitin-protein ligase RAD18
DEG_SPOP_SBC_1
430:434
VLSSS
SPOP
0.99
More...
Q9P212
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1
DEG_SPOP_SBC_1
1175:1179
VLSSS
SPOP
0.9697
More...
Q9UKG1
DCC-interacting protein 13-alpha
DEG_SPOP_SBC_1
687:691
VLSSS
SPOP
0.9973
More...
Q9Y2X9
Zinc finger protein 281
DEG_SPOP_SBC_1
77:81
VLSSS
SPOP
0.9826
More...
A6NMB1
Sialic acid-binding Ig-like lectin 16
DEG_SPOP_SBC_1
277:281
VLSSS
SPOP
0.7762
More...
P17098
Zinc finger protein 8
DEG_SPOP_SBC_1
183:187
VLSSS
SPOP
0.9973
More...
Q3B8N2
Galectin-9B
DEG_SPOP_SBC_1
37:41
VLSSS
SPOP
0.6051
More...
Q8N442
Translation factor GUF1, mitochondrial
DEG_SPOP_SBC_1
437:441
VLSSS
SPOP
0.5017
More...
Q6ZVF9
G protein-regulated inducer of neurite outgrowth 3
DEG_SPOP_SBC_1
177:181
VLSSS
SPOP
0.8195
More...