DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
VLSSS
Uniprot ID:
Q9H329
Source protein:
Band 4.1-like protein 4B
Source gene:
EPB41L4B
Class:
DEG_SPOP_SBC_1
Location:
477:481
E3 ligase:
SPOP
DEGRON score:
0.9088
ASA_SCORE:
79.36
COIL:
0.9012
CONS_SCORE:
0.3017
DSS_SCORE:
0.4482
HELIX:
0.0706
FCONS_SCORE:
0.9763
RIG_SCORE:
0.6616
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S481L
TCGA-24-1565
OV
TCGA
VLSSS
DEG_SPOP_SBC_1
0.7667
p.S481L
DO31719
OV
ICGC
VLSSS
DEG_SPOP_SBC_1
0.7667
p.R483Q
TCGA-AP-A056
UCEC
TCGA
VLSSS
DEG_SPOP_SBC_1
0.2778
p.R483Q
DO43971
UCEC
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.R483W
TCGA-DU-6392
LGG
TCGA
VLSSS
DEG_SPOP_SBC_1
0.2778
p.R483W
DO234257
ESAD
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.R483W
DO22237
LGG
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.P474H
TCGA-EE-A29Q
SKCM
TCGA
VLSSS
DEG_SPOP_SBC_1
0.25
p.P474H
DO37866
SKCM
ICGC
VLSSS
DEG_SPOP_SBC_1
0.25
p.S478L
DO9386
COAD
ICGC
VLSSS
DEG_SPOP_SBC_1
0.7667
p.A482E
DO228948
LICA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.3056
p.P467Q
DO229038
LICA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.0556
p.S475F
DO222908
MELA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.R477S
DO232761
PBCA
ICGC
VLSSS
DEG_SPOP_SBC_1
0.7427
p.G486A
DO51738
STAD
ICGC
VLSSS
DEG_SPOP_SBC_1
0.1944
p.S483L
DO42472
UCEC
ICGC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.S475Y
SIDM00281
Other Solid Cancers
GDSC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.S475Y
ACH-002100
Skin Cancer
CCLE
VLSSS
DEG_SPOP_SBC_1
0.2778
p.S475Y
DJM-1
skin
COSMIC
VLSSS
DEG_SPOP_SBC_1
0.2778
p.S479R
ACH-001282
Bone Cancer
CCLE
VLSSS
DEG_SPOP_SBC_1
0.7427
Drug responses associated with EPB41L4B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00182
Galectin-9
DEG_SPOP_SBC_1
37:41
VLSSS
SPOP
0.6739
More...
O00268
Transcription initiation factor TFIID subunit 4
DEG_SPOP_SBC_1
697:701
VLSSS
SPOP
0.7112
More...
O75113
NEDD4-binding protein 1
DEG_SPOP_SBC_1
254:258
VLSSS
SPOP
0.9995
More...
P19484
Transcription factor EB
DEG_SPOP_SBC_1
130:134
VLSSS
SPOP
0.9904
More...
P25054
Adenomatous polyposis coli protein
DEG_SPOP_SBC_1
291:295
VLSSS
SPOP
0.9986
More...
P98175
RNA-binding protein 10
DEG_SPOP_SBC_1
325:329
VLSSS
SPOP
0.7807
More...
Q07890
Son of sevenless homolog 2
DEG_SPOP_SBC_1
1276:1280
VLSSS
SPOP
0.9839
More...
Q14671
Pumilio homolog 1
DEG_SPOP_SBC_1
225:229
VLSSS
SPOP
0.9888
More...
Q15149
Plectin
DEG_SPOP_SBC_1
978:982
VLSSS
SPOP
0.6246
More...
Q15572
TATA box-binding protein-associated factor RNA polymerase I subunit C
DEG_SPOP_SBC_1
854:858
VLSSS
SPOP
0.893
More...
Q6IAA8
Ragulator complex protein LAMTOR1
DEG_SPOP_SBC_1
94:98
VLSSS
SPOP
0.5049
More...
Q6UUV7
CREB-regulated transcription coactivator 3
DEG_SPOP_SBC_1
341:345
VLSSS
SPOP
0.9871
More...
Q86WP2
Vasculin
DEG_SPOP_SBC_1
377:381
VLSSS
SPOP
0.9365
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
225:229
VLSSS
SPOP
0.993
More...
Q8TB72
Pumilio homolog 2
DEG_SPOP_SBC_1
98:102
VLSSS
SPOP
0.9847
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
570:574
VLSSS
SPOP
0.9598
More...
Q8WUI4
Histone deacetylase 7
DEG_SPOP_SBC_1
505:509
VLSSS
SPOP
0.9515
More...
Q96EB6
NAD-dependent protein deacetylase sirtuin-1
DEG_SPOP_SBC_1
665:669
VLSSS
SPOP
0.888
More...
Q96IT1
Zinc finger protein 496
DEG_SPOP_SBC_1
356:360
VLSSS
SPOP
0.6662
More...
Q96P47
Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3
DEG_SPOP_SBC_1
526:530
VLSSS
SPOP
0.911
More...
Q96QF0
Rab-3A-interacting protein
DEG_SPOP_SBC_1
259:263
VLSSS
SPOP
0.9939
More...
Q9H329
Band 4.1-like protein 4B
DEG_SPOP_SBC_1
477:481
VLSSS
SPOP
0.9088
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
1894:1898
VLSSS
SPOP
0.9125
More...
Q9NS91
E3 ubiquitin-protein ligase RAD18
DEG_SPOP_SBC_1
430:434
VLSSS
SPOP
0.99
More...
Q9P212
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1
DEG_SPOP_SBC_1
1175:1179
VLSSS
SPOP
0.9697
More...
Q9UKG1
DCC-interacting protein 13-alpha
DEG_SPOP_SBC_1
687:691
VLSSS
SPOP
0.9973
More...
Q9Y2X9
Zinc finger protein 281
DEG_SPOP_SBC_1
77:81
VLSSS
SPOP
0.9826
More...
A6NMB1
Sialic acid-binding Ig-like lectin 16
DEG_SPOP_SBC_1
277:281
VLSSS
SPOP
0.7762
More...
P17098
Zinc finger protein 8
DEG_SPOP_SBC_1
183:187
VLSSS
SPOP
0.9973
More...
Q3B8N2
Galectin-9B
DEG_SPOP_SBC_1
37:41
VLSSS
SPOP
0.6051
More...
Q8N442
Translation factor GUF1, mitochondrial
DEG_SPOP_SBC_1
437:441
VLSSS
SPOP
0.5017
More...
Q6ZVF9
G protein-regulated inducer of neurite outgrowth 3
DEG_SPOP_SBC_1
177:181
VLSSS
SPOP
0.8195
More...