DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PPSST
Uniprot ID:
Q9NZP6
Source protein:
Nuclear pore-associated protein 1
Source gene:
NPAP1
Class:
DEG_SPOP_SBC_1
Location:
500:504
E3 ligase:
SPOP
DEGRON score:
0.8227
ASA_SCORE:
85.58
COIL:
0.9662
CONS_SCORE:
0.5752
DSS_SCORE:
0.6875
HELIX:
0.0136
FCONS_SCORE:
0.8589
RIG_SCORE:
0.5242
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P509H
TCGA-17-Z028
LUAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.1944
p.P509H
TCGA-AX-A2HD
UCEC
TCGA
PPSST
DEG_SPOP_SBC_1
0.1944
p.P509H
DO42608
UCEC
ICGC
PPSST
DEG_SPOP_SBC_1
0.1944
p.R513T
TCGA-17-Z056
LUAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.0833
p.F507I
TCGA-29-2434
OV
TCGA
PPSST
DEG_SPOP_SBC_1
0.25
p.F507I
DO31360
OV
ICGC
PPSST
DEG_SPOP_SBC_1
0.25
p.S495Y
TCGA-2F-A9KO
BLCA
TCGA
PPSST
DEG_SPOP_SBC_1
0.1944
p.S495Y
DO51859
BLCA
ICGC
PPSST
DEG_SPOP_SBC_1
0.1944
p.R513K
TCGA-3N-A9WC
SKCM
TCGA
PPSST
DEG_SPOP_SBC_1
0.0833
p.R513K
DO51234
SKCM
ICGC
PPSST
DEG_SPOP_SBC_1
0.0833
p.E514V
TCGA-86-8281
LUAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.0556
p.E514V
DO26318
LUAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.0556
p.A491V
TCGA-AA-A01Z
COAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491V
DO8392
COAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.0833
p.P500R
TCGA-BB-A5HY
HNSC
TCGA
PPSST
DEG_SPOP_SBC_1
0.7512
p.P500R
DO218979
HNSC
ICGC
PPSST
DEG_SPOP_SBC_1
0.7512
p.L493H
TCGA-BR-4184
STAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.1389
p.L493H
DO38328
STAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.1389
p.P501R
TCGA-BR-A4QI
STAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.6401
p.P501R
DO38523
STAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.6401
p.D496Y
TCGA-CV-7245
HNSC
TCGA
PPSST
DEG_SPOP_SBC_1
0.2222
p.D496Y
DO14322
HNSC
ICGC
PPSST
DEG_SPOP_SBC_1
0.2222
p.T512A
TCGA-DU-6392
LGG
TCGA
PPSST
DEG_SPOP_SBC_1
0.1111
p.T512A
DO22237
LGG
ICGC
PPSST
DEG_SPOP_SBC_1
0.1111
p.D496E
TCGA-HR-A5NC
SKCM
TCGA
PPSST
DEG_SPOP_SBC_1
0.2222
p.D496E
DO51265
SKCM
ICGC
PPSST
DEG_SPOP_SBC_1
0.2222
p.A490S
TCGA-IB-7651
PAAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.0556
p.A490S
DO46657
PAAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.0556
p.A491S
TCGA-MP-A4SV
LUAD
TCGA
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491S
DO45339
LUAD
ICGC
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491S
SIDM00049
Colorectal Carcinoma
GDSC
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491S
ACH-002233
Colon/Colorectal Cancer
CCLE
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491S
DIFI
large_intestine
COSMIC
PPSST
DEG_SPOP_SBC_1
0.0833
p.A490T
TCGA-UF-A71B
HNSC
TCGA
PPSST
DEG_SPOP_SBC_1
0.0556
p.A490T
DO52107
HNSC
ICGC
PPSST
DEG_SPOP_SBC_1
0.0556
p.S503F
DO48244
ESCA
ICGC
PPSST
DEG_SPOP_SBC_1
0.7982
p.S503F
SIDM01735
Biliary Tract Carcinoma
GDSC
PPSST
DEG_SPOP_SBC_1
0.7982
p.S503T
DO233761
GACA
ICGC
PPSST
DEG_SPOP_SBC_1
0.6005
p.V511F
DO228976
LICA
ICGC
PPSST
DEG_SPOP_SBC_1
0.1389
p.P505T
DO228983
LICA
ICGC
PPSST
DEG_SPOP_SBC_1
0.3056
p.D496G
DO49189
PACA
ICGC
PPSST
DEG_SPOP_SBC_1
0.2222
p.S506F
SIDM01027
Esophageal Squamous Cell Carcinoma
GDSC
PPSST
DEG_SPOP_SBC_1
0.2778
p.S506F
ACH-000865
Esophageal Cancer
CCLE
PPSST
DEG_SPOP_SBC_1
0.2778
p.S506F
KYSE-450
oesophagus
COSMIC
PPSST
DEG_SPOP_SBC_1
0.2778
p.A491T
SIDM00749
Non-Small Cell Lung Carcinoma
GDSC
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491T
ACH-000916
Lung Cancer
CCLE
PPSST
DEG_SPOP_SBC_1
0.0833
p.A491T
NCI-H1573
lung
COSMIC
PPSST
DEG_SPOP_SBC_1
0.0833
Drug responses associated with NPAP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14686
Histone-lysine N-methyltransferase 2D
DEG_SPOP_SBC_1
2967:2971
PPSST
SPOP
0.9664
More...
O60343
TBC1 domain family member 4
DEG_SPOP_SBC_1
646:650
PPSST
SPOP
0.9933
More...
P15529
Membrane cofactor protein
DEG_SPOP_SBC_1
288:292
PPSST
SPOP
0.9554
More...
P15941
Mucin-1
DEG_SPOP_SBC_1
1220:1224
PPSST
SPOP
0.727
More...
P32243
Homeobox protein OTX2
DEG_SPOP_SBC_1
133:137
PPSST
SPOP
0.9927
More...
P42694
Probable helicase with zinc finger domain
DEG_SPOP_SBC_1
1621:1625
PPSST
SPOP
0.9359
More...
P98160
Basement membrane-specific heparan sulfate proteoglycan core protein
DEG_SPOP_SBC_1
3028:3032
PPSST
SPOP
0.7211
More...
Q02641
Voltage-dependent L-type calcium channel subunit beta-1
DEG_SPOP_SBC_1
414:418
PPSST
SPOP
0.8892
More...
Q13796
Protein Shroom2
DEG_SPOP_SBC_1
735:739
PPSST
SPOP
0.8425
More...
Q2M1Z3
Rho GTPase-activating protein 31
DEG_SPOP_SBC_1
1361:1365
PPSST
SPOP
0.9538
More...
Q6P0Q8
Microtubule-associated serine/threonine-protein kinase 2
DEG_SPOP_SBC_1
1645:1649
PPSST
SPOP
0.9971
More...
Q76L83
Putative Polycomb group protein ASXL2
DEG_SPOP_SBC_1
915:919
PPSST
SPOP
0.9866
More...
Q7Z3B3
KAT8 regulatory NSL complex subunit 1
DEG_SPOP_SBC_1
24:28
PPSST
SPOP
0.9977
More...
Q7Z5J4
Retinoic acid-induced protein 1
DEG_SPOP_SBC_1
500:504
PPSST
SPOP
0.7702
More...
Q86SQ0
Pleckstrin homology-like domain family B member 2
DEG_SPOP_SBC_1
553:557
PPSST
SPOP
0.7645
More...
Q86WP2
Vasculin
DEG_SPOP_SBC_1
16:20
PPSST
SPOP
0.9896
More...
Q8IUC6
TIR domain-containing adapter molecule 1
DEG_SPOP_SBC_1
366:370
PPSST
SPOP
0.9854
More...
Q8IWI9
MAX gene-associated protein
DEG_SPOP_SBC_1
1852:1856
PPSST
SPOP
0.9444
More...
Q8N8W4
Omega-hydroxyceramide transacylase
DEG_SPOP_SBC_1
380:384
PPSST
SPOP
0.9792
More...
Q92793
CREB-binding protein
DEG_SPOP_SBC_1
582:586
PPSST
SPOP
0.9689
More...
Q9C0D6
FH2 domain-containing protein 1
DEG_SPOP_SBC_1
931:935
PPSST
SPOP
0.8254
More...
Q9H0X9
Oxysterol-binding protein-related protein 5
DEG_SPOP_SBC_1
15:19
PPSST
SPOP
0.9979
More...
Q9NZM4
BRD4-interacting chromatin-remodeling complex-associated protein
DEG_SPOP_SBC_1
880:884
PPSST
SPOP
0.9899
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SPOP_SBC_1
500:504
PPSST
SPOP
0.8227
More...
Q9UGU0
Transcription factor 20
DEG_SPOP_SBC_1
1673:1677
PPSST
SPOP
0.5462
More...
Q9UJ78
Zinc finger MYM-type protein 5
DEG_SPOP_SBC_1
489:493
PPSST
SPOP
0.8233
More...
Q9Y2H0
Disks large-associated protein 4
DEG_SPOP_SBC_1
66:70
PPSST
SPOP
0.9674
More...
Q76G19
PDZ domain-containing protein 4
DEG_SPOP_SBC_1
302:306
PPSST
SPOP
0.8947
More...
Q7L0X2
Glutamate-rich protein 6
DEG_SPOP_SBC_1
126:130
PPSST
SPOP
0.8085
More...
Q5VWI1
Transcription elongation regulator 1-like protein
DEG_SPOP_SBC_1
127:131
PPSST
SPOP
0.9468
More...