DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PASTS
Uniprot ID:
Q9Y4C1
Source protein:
Lysine-specific demethylase 3A
Source gene:
KDM3A
Class:
DEG_SPOP_SBC_1
Location:
815:819
E3 ligase:
SPOP
DEGRON score:
0.9164
ASA_SCORE:
58.28
COIL:
0.7964
CONS_SCORE:
0.3501
DSS_SCORE:
0.4646
HELIX:
0.133
FCONS_SCORE:
0.855
RIG_SCORE:
0.6641
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S829N
TCGA-AO-A03V
BRCA
TCGA
PASTS
DEG_SPOP_SBC_1
0.0556
p.S829N
DO2443
BRCA
ICGC
PASTS
DEG_SPOP_SBC_1
0.0556
p.T818A
TCGA-XK-AAIW
PRAD
TCGA
PASTS
DEG_SPOP_SBC_1
0.7139
p.T818A
DO51407
PRAD
ICGC
PASTS
DEG_SPOP_SBC_1
0.7139
p.D826N
DO229003
COCA
ICGC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
DO52346
LUSC
ICGC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
SIDM00277
Acute Myeloid Leukemia
GDSC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
SIDM00260
Gastric Carcinoma
GDSC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
SIDM00363
Acute Myeloid Leukemia
GDSC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
SIDM00248
Gastric Carcinoma
GDSC
PASTS
DEG_SPOP_SBC_1
0.1389
p.D826N
SIDM01618
B-Lymphoblastic Leukemia
GDSC
PASTS
DEG_SPOP_SBC_1
0.1389
p.P820T
DO223061
ESCA
ICGC
PASTS
DEG_SPOP_SBC_1
0.3056
p.S809N
DO231937
LICA
ICGC
PASTS
DEG_SPOP_SBC_1
0.1667
p.T828S
SIDM00018
Acute Myeloid Leukemia
GDSC
PASTS
DEG_SPOP_SBC_1
0.0833
p.T828S
KO52
haematopoietic_and_lymphoid_tissue
COSMIC
PASTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with KDM3A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PASTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15075
Serine/threonine-protein kinase DCLK1
DEG_SPOP_SBC_1
308:312
PASTS
SPOP
0.9913
More...
O75151
Lysine-specific demethylase PHF2
DEG_SPOP_SBC_1
993:997
PASTS
SPOP
0.8792
More...
O75592
E3 ubiquitin-protein ligase MYCBP2
DEG_SPOP_SBC_1
2725:2729
PASTS
SPOP
0.999
More...
O75694
Nuclear pore complex protein Nup155
DEG_SPOP_SBC_1
11:15
PASTS
SPOP
0.9977
More...
O94973
AP-2 complex subunit alpha-2
DEG_SPOP_SBC_1
646:650
PASTS
SPOP
0.827
More...
O95208
Epsin-2
DEG_SPOP_SBC_1
372:376
PASTS
SPOP
0.9841
More...
P15822
Zinc finger protein 40
DEG_SPOP_SBC_1
2657:2661
PASTS
SPOP
0.9979
More...
P20749
B-cell lymphoma 3 protein
DEG_SPOP_SBC_1
365:369
PASTS
SPOP
0.954
More...
P28908
Tumor necrosis factor receptor superfamily member 8
DEG_SPOP_SBC_1
345:349
PASTS
SPOP
0.9474
More...
Q01970
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
DEG_SPOP_SBC_1
927:931
PASTS
SPOP
0.985
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
556:560
PASTS
SPOP
0.7232
More...
Q15788
Nuclear receptor coactivator 1
DEG_SPOP_SBC_1
1181:1185
PASTS
SPOP
0.9984
More...
Q16621
Transcription factor NF-E2 45 kDa subunit
DEG_SPOP_SBC_1
86:90
PASTS
SPOP
0.9466
More...
Q3SXY7
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3
DEG_SPOP_SBC_1
463:467
PASTS
SPOP
0.9585
More...
Q5TCY1
Tau-tubulin kinase 1
DEG_SPOP_SBC_1
1236:1240
PASTS
SPOP
0.9958
More...
Q659A1
Little elongation complex subunit 2
DEG_SPOP_SBC_1
419:423
PASTS
SPOP
0.9906
More...
Q6ZT12
E3 ubiquitin-protein ligase UBR3
DEG_SPOP_SBC_1
1016:1020
PASTS
SPOP
0.5066
More...
Q8IWZ3
Ankyrin repeat and KH domain-containing protein 1
DEG_SPOP_SBC_1
2005:2009
PASTS
SPOP
0.9657
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
549:553
PASTS
SPOP
0.7898
More...
Q99469
SH3 and cysteine-rich domain-containing protein
DEG_SPOP_SBC_1
28:32
PASTS
SPOP
0.9799
More...
Q99743
Neuronal PAS domain-containing protein 2
DEG_SPOP_SBC_1
650:654
PASTS
SPOP
0.9948
More...
Q9NWS9
Zinc finger protein 446
DEG_SPOP_SBC_1
198:202
PASTS
SPOP
0.9975
More...
Q9UGN4
CMRF35-like molecule 8
DEG_SPOP_SBC_1
126:130
PASTS
SPOP
0.8075
More...
Q9UIU6
Homeobox protein SIX4
DEG_SPOP_SBC_1
356:360
PASTS
SPOP
0.6906
More...
Q9ULD8
Potassium voltage-gated channel subfamily H member 3
DEG_SPOP_SBC_1
928:932
PASTS
SPOP
0.9499
More...
Q9Y4C1
Lysine-specific demethylase 3A
DEG_SPOP_SBC_1
815:819
PASTS
SPOP
0.9164
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
1763:1767
PASTS
SPOP
0.9781
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
1778:1782
PASTS
SPOP
0.9401
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
1820:1824
PASTS
SPOP
0.8745
More...
Q9Y5Y7
Lymphatic vessel endothelial hyaluronic acid receptor 1
DEG_SPOP_SBC_1
188:192
PASTS
SPOP
0.5868
More...
Q6IEE8
Schlafen family member 12-like
DEG_SPOP_SBC_1
372:376
PASTS
SPOP
0.7893
More...
Q6NSJ2
Pleckstrin homology-like domain family B member 3
DEG_SPOP_SBC_1
85:89
PASTS
SPOP
0.9511
More...
Q6ZRI6
Uncharacterized protein C15orf39
DEG_SPOP_SBC_1
753:757
PASTS
SPOP
0.9882
More...
Q8N4U5
T-complex protein 11-like protein 2
DEG_SPOP_SBC_1
51:55
PASTS
SPOP
0.9613
More...
A6NNA2
Serine/arginine repetitive matrix protein 3
DEG_SPOP_SBC_1
467:471
PASTS
SPOP
0.9948
More...
A8MTJ6
Forkhead box protein I3
DEG_SPOP_SBC_1
387:391
PASTS
SPOP
0.9013
More...
Q0P670
Uncharacterized protein SPEM2
DEG_SPOP_SBC_1
482:486
PASTS
SPOP
0.9926
More...
Q8NCL8
Transmembrane protein 116
DEG_SPOP_SBC_1
238:242
PASTS
SPOP
0.963
More...
Q8WTZ4
Putative inactive carbonic anhydrase 5B-like protein
DEG_SPOP_SBC_1
5:9
PASTS
SPOP
0.7966
More...