DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPVY
Uniprot ID:
Q92738
Source protein:
USP6 N-terminal-like protein
Source gene:
USP6NL
Class:
ITCH
Location:
635:638
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9985
ASA_SCORE:
80.375
COIL:
0.8798
CONS_SCORE:
0.2134
DSS_SCORE:
0.6246
HELIX:
0.0248
FCONS_SCORE:
1.0772
RIG_SCORE:
0.579
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G638V
TCGA-86-8358
LUAD
TCGA
PPVY
ITCH
0.7532
p.G642W
TCGA-A3-A6NL
KIRC
TCGA
PPVY
ITCH
0.6667
p.P633S
TCGA-EE-A2A0
SKCM
TCGA
PPVY
ITCH
0.7222
p.P633S
TCGA-EE-A2GN
SKCM
TCGA
PPVY
ITCH
0.7222
p.P633S
TCGA-GF-A6C9
SKCM
TCGA
PPVY
ITCH
0.7222
p.P633S
DO37896
SKCM
ICGC
PPVY
ITCH
0.7222
p.P633S
DO37439
SKCM
ICGC
PPVY
ITCH
0.7222
p.P633S
DO51254
SKCM
ICGC
PPVY
ITCH
0.7222
p.P633L
TCGA-GN-A266
SKCM
TCGA
PPVY
ITCH
0.7222
p.S648F
TCGA-GU-A764
BLCA
TCGA
PPVY
ITCH
0.5
p.P647L
TCGA-VR-AA7B
ESCA
TCGA
PPVY
ITCH
0.0833
p.P646S
DO228423
BRCA
ICGC
PPVY
ITCH
0.1111
p.G648W
DO50458
KIRC
ICGC
PPVY
ITCH
0.5
p.P639Q
DO229029
LICA
ICGC
PPVY
ITCH
0.3056
p.G644V
DO25471
LUAD
ICGC
PPVY
ITCH
0.2778
p.R637L
DO47299
SKCM
ICGC
PPVY
ITCH
0.8428
p.P639L
DO37432
SKCM
ICGC
PPVY
ITCH
0.3056
p.A640S
SIDM00423
B-Cell Non-Hodgkin's Lymphoma
GDSC
PPVY
ITCH
0.2778
p.A640S
SU-DHL-8
NS
COSMIC
PPVY
ITCH
0.2778
p.T648I
ACH-000237
Ovarian Cancer
CCLE
PPVY
ITCH
0.5
p.T648I
ACH-000524
Ovarian Cancer
CCLE
PPVY
ITCH
0.5
p.T648I
ACH-001495
Endometrial/Uterine Cancer
CCLE
PPVY
ITCH
0.5
p.T648I
ACH-001850
Gallbladder Cancer
CCLE
PPVY
ITCH
0.5
p.T648I
ACH-001856
Bile Duct Cancer
CCLE
PPVY
ITCH
0.5
p.S633N
ACH-000941
Endometrial/Uterine Cancer
CCLE
PPVY
ITCH
0.7222
p.S633N
ACH-001517
Endometrial/Uterine Cancer
CCLE
PPVY
ITCH
0.7222
p.S633N
HEC-1
endometrium
COSMIC
PPVY
ITCH
0.7222
p.A646S
SU-DHL-8
NS
COSMIC
PPVY
ITCH
0.1111
Drug responses associated with USP6NL mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPVY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NI15
Mesogenin-1
ITCH
152:155
PPVY
ITCH,NEDD4
0.9842
More...
O00358
Forkhead box protein E1
ITCH
209:212
PPVY
ITCH,NEDD4
0.6942
More...
O43760
Synaptogyrin-2
ITCH
221:224
PPVY
ITCH,NEDD4
0.9998
More...
O95696
Bromodomain-containing protein 1
ITCH
136:139
PPVY
ITCH,NEDD4
0.9995
More...
P05412
Transcription factor Jun
ITCH
167:170
PPVY
ITCH,NEDD4
0.9159
More...
P07202
Thyroid peroxidase
ITCH
178:181
PPVY
ITCH,NEDD4
0.6723
More...
P15311
Ezrin
ITCH
475:478
PPVY
ITCH,NEDD4
0.9955
More...
P16930
Fumarylacetoacetase
ITCH
187:190
PPVY
ITCH,NEDD4
0.9388
More...
P17275
Transcription factor JunB
ITCH
179:182
PPVY
ITCH,NEDD4
0.9876
More...
P19544
Wilms tumor protein
ITCH
197:200
PPVY
ITCH,NEDD4
0.9912
More...
P51817
cAMP-dependent protein kinase catalytic subunit PRKX
ITCH
41:44
PPVY
ITCH,NEDD4
0.9981
More...
P51841
Retinal guanylyl cyclase 2
ITCH
768:771
PPVY
ITCH,NEDD4
0.5364
More...
Q14738
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform
ITCH
529:532
PPVY
ITCH,NEDD4
0.9915
More...
Q5TD94
Radial spoke head protein 4 homolog A
ITCH
663:666
PPVY
ITCH,NEDD4
0.999
More...
Q8IWI9
MAX gene-associated protein
ITCH
1388:1391
PPVY
ITCH,NEDD4
0.9681
More...
Q8IWZ3
Ankyrin repeat and KH domain-containing protein 1
ITCH
1039:1042
PPVY
ITCH,NEDD4
0.9027
More...
Q8IYH5
ZZ-type zinc finger-containing protein 3
ITCH
752:755
PPVY
ITCH,NEDD4
0.9129
More...
Q8IZQ1
WD repeat and FYVE domain-containing protein 3
ITCH
819:822
PPVY
ITCH,NEDD4
0.8291
More...
Q8WUM4
Programmed cell death 6-interacting protein
ITCH
834:837
PPVY
ITCH,NEDD4
0.9847
More...
Q92738
USP6 N-terminal-like protein
ITCH
635:638
PPVY
ITCH,NEDD4
0.9985
More...
Q96HB5
Coiled-coil domain-containing protein 120
ITCH
489:492
PPVY
ITCH,NEDD4
0.9291
More...
Q96I25
Splicing factor 45
ITCH
211:214
PPVY
ITCH,NEDD4
0.997
More...
Q96L91
E1A-binding protein p400
ITCH
2281:2284
PPVY
ITCH,NEDD4
0.9976
More...
Q96ST3
Paired amphipathic helix protein Sin3a
ITCH
38:41
PPVY
ITCH,NEDD4
0.5288
More...
Q9BRR9
Rho GTPase-activating protein 9
ITCH
188:191
PPVY
ITCH,NEDD4
0.9955
More...
Q9BYN7
Zinc finger protein 341
ITCH
255:258
PPVY
ITCH,NEDD4
0.9224
More...
Q9NR48
Histone-lysine N-methyltransferase ASH1L
ITCH
523:526
PPVY
ITCH,NEDD4
0.7929
More...
Q9UHG2
ProSAAS
ITCH
168:171
PPVY
ITCH,NEDD4
0.9983
More...
Q9UJ55
MAGE-like protein 2
ITCH
20:23
PPVY
ITCH,NEDD4
0.9909
More...
Q9UKI9
POU domain, class 2, transcription factor 3
ITCH
349:352
PPVY
ITCH,NEDD4
0.8894
More...
B8ZZ34
Protein shisa-8
ITCH
313:316
PPVY
ITCH,NEDD4
0.9544
More...
P59827
BPI fold-containing family B member 4
ITCH
72:75
PPVY
ITCH,NEDD4
0.993
More...
Q6PJG2
Mitotic deacetylase-associated SANT domain protein
ITCH
621:624
PPVY
ITCH,NEDD4
0.9954
More...
Q96DD7
Protein shisa-4
ITCH
176:179
PPVY
ITCH,NEDD4
0.8305
More...
Q9NZL6
Ral guanine nucleotide dissociation stimulator-like 1
ITCH
639:642
PPVY
ITCH,NEDD4
0.9944
More...
Q9P266
Junctional protein associated with coronary artery disease
ITCH
337:340
PPVY
ITCH,NEDD4
0.8881
More...
Q96ME7
Zinc finger protein 512
ITCH
147:150
PPVY
ITCH,NEDD4
0.8319
More...
Q9BXU3
Testis-expressed protein 13A
ITCH
371:374
PPVY
ITCH,NEDD4
0.6412
More...
Q9NWM3
CUE domain-containing protein 1
ITCH
128:131
PPVY
ITCH,NEDD4
0.9994
More...
A8MWL6
Putative synaptogyrin-2 like protein
ITCH
220:223
PPVY
ITCH,NEDD4
0.9995
More...