DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PSSST
Uniprot ID:
Q96H35
Source protein:
Probable RNA-binding protein 18
Source gene:
RBM18
Class:
DEG_SPOP_SBC_1
Location:
126:130
E3 ligase:
SPOP
DEGRON score:
0.9314
ASA_SCORE:
84.42
COIL:
0.9348
CONS_SCORE:
0.3719
DSS_SCORE:
0.4884
HELIX:
0.0352
FCONS_SCORE:
0.9892
RIG_SCORE:
0.5968
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T133I
TCGA-B7-5816
STAD
TCGA
PSSST
DEG_SPOP_SBC_1
0.6944
p.T133I
DO38599
STAD
ICGC
PSSST
DEG_SPOP_SBC_1
0.6944
p.P126Q
DO229037
LICA
ICGC
PSSST
DEG_SPOP_SBC_1
0.7035
p.E125K
DO228222
MALY
ICGC
PSSST
DEG_SPOP_SBC_1
0.3056
p.N136K
SIDM02039
Colorectal Carcinoma
GDSC
PSSST
DEG_SPOP_SBC_1
0.1667
p.T133A
SIDM01089
B-Cell Non-Hodgkin's Lymphoma
GDSC
PSSST
DEG_SPOP_SBC_1
0.6944
p.T133A
ACH-000371
Lymphoma
CCLE
PSSST
DEG_SPOP_SBC_1
0.6944
p.T133A
RL
haematopoietic_and_lymphoid_tissue
COSMIC
PSSST
DEG_SPOP_SBC_1
0.6944
Drug responses associated with RBM18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PSSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NJ46
Homeobox protein Nkx-6.3
DEG_SPOP_SBC_1
202:206
PSSST
SPOP
0.9
More...
O14986
Phosphatidylinositol 4-phosphate 5-kinase type-1 beta
DEG_SPOP_SBC_1
505:509
PSSST
SPOP
0.9262
More...
O75509
Tumor necrosis factor receptor superfamily member 21
DEG_SPOP_SBC_1
5:9
PSSST
SPOP
0.5341
More...
Q02446
Transcription factor Sp4
DEG_SPOP_SBC_1
318:322
PSSST
SPOP
0.9616
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
2215:2219
PSSST
SPOP
0.6889
More...
Q03164
Histone-lysine N-methyltransferase 2A
DEG_SPOP_SBC_1
994:998
PSSST
SPOP
0.9774
More...
Q12955
Ankyrin-3
DEG_SPOP_SBC_1
1726:1730
PSSST
SPOP
0.9933
More...
Q13233
Mitogen-activated protein kinase kinase kinase 1
DEG_SPOP_SBC_1
938:942
PSSST
SPOP
0.9979
More...
Q13233
Mitogen-activated protein kinase kinase kinase 1
DEG_SPOP_SBC_1
986:990
PSSST
SPOP
0.9935
More...
Q13495
Mastermind-like domain-containing protein 1
DEG_SPOP_SBC_1
254:258
PSSST
SPOP
0.9751
More...
Q14209
Transcription factor E2F2
DEG_SPOP_SBC_1
333:337
PSSST
SPOP
0.9654
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SPOP_SBC_1
1309:1313
PSSST
SPOP
0.9397
More...
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
1204:1208
PSSST
SPOP
0.9958
More...
Q6Y7W6
GRB10-interacting GYF protein 2
DEG_SPOP_SBC_1
924:928
PSSST
SPOP
0.9123
More...
Q70EL1
Inactive ubiquitin carboxyl-terminal hydrolase 54
DEG_SPOP_SBC_1
498:502
PSSST
SPOP
0.5622
More...
Q8IWI9
MAX gene-associated protein
DEG_SPOP_SBC_1
1469:1473
PSSST
SPOP
0.9959
More...
Q8N3K9
Cardiomyopathy-associated protein 5
DEG_SPOP_SBC_1
1349:1353
PSSST
SPOP
0.9813
More...
Q96NM4
TOX high mobility group box family member 2
DEG_SPOP_SBC_1
212:216
PSSST
SPOP
0.9686
More...
Q9C0D5
Protein TANC1
DEG_SPOP_SBC_1
466:470
PSSST
SPOP
0.9963
More...
Q9H204
Mediator of RNA polymerase II transcription subunit 28
DEG_SPOP_SBC_1
39:43
PSSST
SPOP
0.9773
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2120:2124
PSSST
SPOP
0.9022
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2677:2681
PSSST
SPOP
0.997
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3377:3381
PSSST
SPOP
0.9878
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3934:3938
PSSST
SPOP
0.5887
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4667:4671
PSSST
SPOP
0.896
More...
Q9NRE2
Teashirt homolog 2
DEG_SPOP_SBC_1
721:725
PSSST
SPOP
0.9083
More...
Q9P0K1
Disintegrin and metalloproteinase domain-containing protein 22
DEG_SPOP_SBC_1
867:871
PSSST
SPOP
0.9989
More...
Q9P278
Folliculin-interacting protein 2
DEG_SPOP_SBC_1
256:260
PSSST
SPOP
0.9927
More...
Q9UJY4
ADP-ribosylation factor-binding protein GGA2
DEG_SPOP_SBC_1
399:403
PSSST
SPOP
0.9967
More...
Q9Y463
Dual specificity tyrosine-phosphorylation-regulated kinase 1B
DEG_SPOP_SBC_1
459:463
PSSST
SPOP
0.8712
More...
Q9Y4E5
E3 SUMO-protein ligase ZNF451
DEG_SPOP_SBC_1
572:576
PSSST
SPOP
0.9842
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
704:708
PSSST
SPOP
0.9079
More...
Q96P26
Cytosolic 5'-nucleotidase 1B
DEG_SPOP_SBC_1
148:152
PSSST
SPOP
0.9953
More...
Q96S82
Ubiquitin-like protein 7
DEG_SPOP_SBC_1
244:248
PSSST
SPOP
0.9487
More...
Q6ZU67
BEN domain-containing protein 4
DEG_SPOP_SBC_1
305:309
PSSST
SPOP
0.9981
More...
Q9H5J0
Zinc finger and BTB domain-containing protein 3
DEG_SPOP_SBC_1
272:276
PSSST
SPOP
0.9351
More...
Q9ULL1
Pleckstrin homology domain-containing family G member 1
DEG_SPOP_SBC_1
514:518
PSSST
SPOP
0.7015
More...
Q96H35
Probable RNA-binding protein 18
DEG_SPOP_SBC_1
126:130
PSSST
SPOP
0.9314
More...
Q9BXQ6
Transmembrane protein 121B
DEG_SPOP_SBC_1
68:72
PSSST
SPOP
0.9951
More...
Q9BY89
Uncharacterized protein KIAA1671
DEG_SPOP_SBC_1
139:143
PSSST
SPOP
0.9816
More...