DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PPSTS
Uniprot ID:
O94933
Source protein:
SLIT and NTRK-like protein 3
Source gene:
SLITRK3
Class:
DEG_SPOP_SBC_1
Location:
344:348
E3 ligase:
SPOP
DEGRON score:
0.5069
ASA_SCORE:
48.6
COIL:
0.8174
CONS_SCORE:
0.6391
DSS_SCORE:
0.8409
HELIX:
0.1252
FCONS_SCORE:
0.9713
RIG_SCORE:
0.551
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P358S
TCGA-18-4083
LUSC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.0556
p.P358S
DO26504
LUSC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.0556
p.R340G
TCGA-55-8507
LUAD
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340G
DO45412
LUAD
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340G
SIDM01146
Gastric Carcinoma
GDSC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340G
ACH-000932
Gastric Cancer
CCLE
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340G
NCI-SNU-1
stomach
COSMIC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340L
TCGA-60-2725
LUSC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340L
DO26674
LUSC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.Y352C
TCGA-96-7545
LUSC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.Y352C
DO26492
LUSC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R343M
TCGA-A5-A0G2
UCEC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.3056
p.R343M
TCGA-EO-A22U
UCEC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.3056
p.R343M
DO41235
UCEC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.3056
p.R343M
DO43755
UCEC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.3056
p.R340Q
TCGA-AP-A056
UCEC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340Q
TCGA-CN-A6V3
HNSC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340Q
TCGA-GF-A6C9
SKCM
TCGA
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340Q
DO52050
HNSC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340Q
DO51254
SKCM
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.R340Q
DO43971
UCEC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2222
p.S348F
TCGA-ER-A42L
SKCM
TCGA
PPSTS
DEG_SPOP_SBC_1
0.7982
p.S348F
DO223910
SKCM
ICGC
PPSTS
DEG_SPOP_SBC_1
0.7982
p.P345L
TCGA-FI-A2D0
UCEC
TCGA
PPSTS
DEG_SPOP_SBC_1
0.6471
p.P345L
DO43891
UCEC
ICGC
PPSTS
DEG_SPOP_SBC_1
0.6471
p.P358T
DO222404
BTCA
ICGC
PPSTS
DEG_SPOP_SBC_1
0.0556
p.Q338K
DO228985
LICA
ICGC
PPSTS
DEG_SPOP_SBC_1
0.1667
p.P342Q
DO229022
LICA
ICGC
PPSTS
DEG_SPOP_SBC_1
0.2778
p.T341K
DO229031
LICA
ICGC
PPSTS
DEG_SPOP_SBC_1
0.25
p.S346A
SIDM00958
Chronic Myelogenous Leukemia
GDSC
PPSTS
DEG_SPOP_SBC_1
0.7588
p.S346A
ACH-000920
Leukemia
CCLE
PPSTS
DEG_SPOP_SBC_1
0.7588
p.P335L
SIDM00922
Non-Small Cell Lung Carcinoma
GDSC
PPSTS
DEG_SPOP_SBC_1
0.0833
p.P335L
Calu-3
lung
COSMIC
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
SIDM00120
Prostate Carcinoma
GDSC
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
SIDM00507
Other Solid Cancers
GDSC
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
ACH-000979
Prostate Cancer
CCLE
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
ACH-001490
Lung Cancer
CCLE
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
COR-L321
NS
COSMIC
PPSTS
DEG_SPOP_SBC_1
0.0833
p.Q357K
DU-145
prostate
COSMIC
PPSTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with SLITRK3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00160
Unconventional myosin-If
DEG_SPOP_SBC_1
984:988
PPSTS
SPOP
0.9842
More...
O14746
Telomerase reverse transcriptase
DEG_SPOP_SBC_1
307:311
PPSTS
SPOP
0.9923
More...
O15018
PDZ domain-containing protein 2
DEG_SPOP_SBC_1
904:908
PPSTS
SPOP
0.8193
More...
O43516
WAS/WASL-interacting protein family member 1
DEG_SPOP_SBC_1
432:436
PPSTS
SPOP
0.9568
More...
O43526
Potassium voltage-gated channel subfamily KQT member 2
DEG_SPOP_SBC_1
713:717
PPSTS
SPOP
0.8569
More...
O60312
Phospholipid-transporting ATPase VA
DEG_SPOP_SBC_1
959:963
PPSTS
SPOP
0.8225
More...
O75175
CCR4-NOT transcription complex subunit 3
DEG_SPOP_SBC_1
465:469
PPSTS
SPOP
0.8566
More...
O94933
SLIT and NTRK-like protein 3
DEG_SPOP_SBC_1
344:348
PPSTS
SPOP
0.5069
More...
P16150
Leukosialin
DEG_SPOP_SBC_1
66:70
PPSTS
SPOP
0.9993
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
577:581
PPSTS
SPOP
0.9911
More...
Q09472
Histone acetyltransferase p300
DEG_SPOP_SBC_1
954:958
PPSTS
SPOP
0.9959
More...
Q12830
Nucleosome-remodeling factor subunit BPTF
DEG_SPOP_SBC_1
84:88
PPSTS
SPOP
0.9962
More...
Q13207
T-box transcription factor TBX2
DEG_SPOP_SBC_1
631:635
PPSTS
SPOP
0.9985
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SPOP_SBC_1
1374:1378
PPSTS
SPOP
0.9728
More...
Q14938
Nuclear factor 1 X-type
DEG_SPOP_SBC_1
269:273
PPSTS
SPOP
0.9824
More...
Q7Z570
Zinc finger protein 804A
DEG_SPOP_SBC_1
798:802
PPSTS
SPOP
0.9948
More...
Q7Z7A4
PX domain-containing protein kinase-like protein
DEG_SPOP_SBC_1
505:509
PPSTS
SPOP
0.794
More...
Q86TM6
E3 ubiquitin-protein ligase synoviolin
DEG_SPOP_SBC_1
406:410
PPSTS
SPOP
0.9932
More...
Q92918
Mitogen-activated protein kinase kinase kinase kinase 1
DEG_SPOP_SBC_1
442:446
PPSTS
SPOP
0.9477
More...
Q9BQ89
Protein FAM110A
DEG_SPOP_SBC_1
145:149
PPSTS
SPOP
0.8404
More...
Q9NS91
E3 ubiquitin-protein ligase RAD18
DEG_SPOP_SBC_1
190:194
PPSTS
SPOP
0.91
More...
Q9NYQ6
Cadherin EGF LAG seven-pass G-type receptor 1
DEG_SPOP_SBC_1
906:910
PPSTS
SPOP
0.9655
More...
Q9UHV7
Mediator of RNA polymerase II transcription subunit 13
DEG_SPOP_SBC_1
765:769
PPSTS
SPOP
0.9907
More...
Q9UMN6
Histone-lysine N-methyltransferase 2B
DEG_SPOP_SBC_1
419:423
PPSTS
SPOP
0.9758
More...
Q9UPN9
E3 ubiquitin-protein ligase TRIM33
DEG_SPOP_SBC_1
742:746
PPSTS
SPOP
0.9525
More...
Q9Y520
Protein PRRC2C
DEG_SPOP_SBC_1
1755:1759
PPSTS
SPOP
0.9881
More...
Q96M27
Protein PRRC1
DEG_SPOP_SBC_1
111:115
PPSTS
SPOP
0.9952
More...
Q5T8I3
Protein FAM102B
DEG_SPOP_SBC_1
152:156
PPSTS
SPOP
0.978
More...
Q96KW2
POM121-like protein 2
DEG_SPOP_SBC_1
130:134
PPSTS
SPOP
0.5646
More...
Q96KW2
POM121-like protein 2
DEG_SPOP_SBC_1
483:487
PPSTS
SPOP
0.9614
More...
Q8IXP5
Uncharacterized protein C11orf53
DEG_SPOP_SBC_1
130:134
PPSTS
SPOP
0.9669
More...