DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPRY
Uniprot ID:
O15417
Source protein:
Trinucleotide repeat-containing gene 18 protein
Source gene:
TNRC18
Class:
ITCH
Location:
1079:1082
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.9345
ASA_SCORE:
92.4
COIL:
0.9448
CONS_SCORE:
0.419
DSS_SCORE:
0.398
HELIX:
0.0163
FCONS_SCORE:
1.1241
RIG_SCORE:
0.7236
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1092W
TCGA-D3-A2JN
SKCM
TCGA
PPRY
ITCH
0.0556
p.G1092W
TCGA-EE-A3AC
SKCM
TCGA
PPRY
ITCH
0.0556
p.G1092W
TCGA-FS-A1Z4
SKCM
TCGA
PPRY
ITCH
0.0556
p.G1092W
DO37631
SKCM
ICGC
PPRY
ITCH
0.0556
p.G1092W
DO37462
SKCM
ICGC
PPRY
ITCH
0.0556
p.G1092W
DO47590
SKCM
ICGC
PPRY
ITCH
0.0556
p.P1070L
TCGA-WE-A8ZT
SKCM
TCGA
PPRY
ITCH
0.0833
p.P1070L
DO51290
SKCM
ICGC
PPRY
ITCH
0.0833
p.L1074M
TCGA-XK-AAIW
PRAD
TCGA
PPRY
ITCH
0.1944
p.L1074M
DO51407
PRAD
ICGC
PPRY
ITCH
0.1944
p.F1071L
TCGA-ZF-AA4X
BLCA
TCGA
PPRY
ITCH
0.1111
p.F1071L
DO219091
BLCA
ICGC
PPRY
ITCH
0.1111
p.H1090R
SIDM00445
Esophageal Carcinoma
GDSC
PPRY
ITCH
0.1111
p.P1070A
SIDM00150
Colorectal Carcinoma
GDSC
PPRY
ITCH
0.0833
p.P1070A
ACH-000969
Colon/Colorectal Cancer
CCLE
PPRY
ITCH
0.0833
p.P1070A
KM12
large_intestine
COSMIC
PPRY
ITCH
0.0833
Drug responses associated with TNRC18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPRY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6ND36
Protein FAM83G
ITCH
717:720
PPRY
ITCH,NEDD4
0.7033
More...
O00299
Chloride intracellular channel protein 1
ITCH
90:93
PPRY
ITCH,NEDD4
0.8886
More...
O15247
Chloride intracellular channel protein 2
ITCH
96:99
PPRY
ITCH,NEDD4
0.9319
More...
O43313
ATM interactor
ITCH
287:290
PPRY
ITCH,NEDD4
0.9841
More...
O43435
T-box transcription factor TBX1
ITCH
47:50
PPRY
ITCH,NEDD4
0.9424
More...
O75208
Ubiquinone biosynthesis protein COQ9, mitochondrial
ITCH
79:82
PPRY
ITCH,NEDD4
0.8635
More...
O95793
Double-stranded RNA-binding protein Staufen homolog 1
ITCH
113:116
PPRY
ITCH,NEDD4
0.9455
More...
P05198
Eukaryotic translation initiation factor 2 subunit 1
ITCH
232:235
PPRY
ITCH,NEDD4
0.6815
More...
P21860
Receptor tyrosine-protein kinase erbB-3
ITCH
972:975
PPRY
ITCH,NEDD4
0.9993
More...
P30876
DNA-directed RNA polymerase II subunit RPB2
ITCH
81:84
PPRY
ITCH,NEDD4
0.9176
More...
P53007
Tricarboxylate transport protein, mitochondrial
ITCH
61:64
PPRY
ITCH,NEDD4
0.7489
More...
P54753
Ephrin type-B receptor 3
ITCH
438:441
PPRY
ITCH,NEDD4
0.969
More...
Q09327
Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
ITCH
148:151
PPRY
ITCH,NEDD4
0.9144
More...
Q13825
Methylglutaconyl-CoA hydratase, mitochondrial
ITCH
333:336
PPRY
ITCH,NEDD4
0.5278
More...
Q14332
Frizzled-2
ITCH
189:192
PPRY
ITCH,NEDD4
0.5291
More...
Q14526
Hypermethylated in cancer 1 protein
ITCH
377:380
PPRY
ITCH,NEDD4
0.9217
More...
Q5CZC0
Fibrous sheath-interacting protein 2
ITCH
5867:5870
PPRY
ITCH,NEDD4
0.994
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
ITCH
1458:1461
PPRY
ITCH,NEDD4
0.5362
More...
Q6VAB6
Kinase suppressor of Ras 2
ITCH
486:489
PPRY
ITCH,NEDD4
0.9326
More...
Q86TB9
Protein PAT1 homolog 1
ITCH
221:224
PPRY
ITCH,NEDD4
0.9488
More...
Q8TC29
Enkurin
ITCH
24:27
PPRY
ITCH,NEDD4
0.9988
More...
Q8WUF5
RelA-associated inhibitor
ITCH
67:70
PPRY
ITCH,NEDD4
0.994
More...
Q8WWW0
Ras association domain-containing protein 5
ITCH
21:24
PPRY
ITCH,NEDD4
0.8918
More...
Q96NY7
Chloride intracellular channel protein 6
ITCH
553:556
PPRY
ITCH,NEDD4
0.9782
More...
Q96SN8
CDK5 regulatory subunit-associated protein 2
ITCH
1239:1242
PPRY
ITCH,NEDD4
0.9754
More...
Q96T58
Msx2-interacting protein
ITCH
771:774
PPRY
ITCH,NEDD4
0.7541
More...
Q99959
Plakophilin-2
ITCH
191:194
PPRY
ITCH,NEDD4
0.9964
More...
Q9H2D6
TRIO and F-actin-binding protein
ITCH
1029:1032
PPRY
ITCH,NEDD4
0.9563
More...
Q9NQL9
Doublesex- and mab-3-related transcription factor 3
ITCH
365:368
PPRY
ITCH,NEDD4
0.9917
More...
Q9NR12
PDZ and LIM domain protein 7
ITCH
101:104
PPRY
ITCH,NEDD4
0.9771
More...
Q9NU39
Forkhead box protein D4-like 1
ITCH
266:269
PPRY
ITCH,NEDD4
0.9298
More...
Q9NYQ8
Protocadherin Fat 2
ITCH
4240:4243
PPRY
ITCH,NEDD4
0.9922
More...
Q9UJV9
Probable ATP-dependent RNA helicase DDX41
ITCH
148:151
PPRY
ITCH,NEDD4
0.9995
More...
Q9ULH7
Myocardin-related transcription factor B
ITCH
871:874
PPRY
ITCH,NEDD4
0.999
More...
O15417
Trinucleotide repeat-containing gene 18 protein
ITCH
1079:1082
PPRY
ITCH,NEDD4
0.9345
More...
Q8WVE6
Transmembrane protein 171
ITCH
301:304
PPRY
ITCH,NEDD4
0.9994
More...