DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VSSTS
Uniprot ID:
Q8IVL1
Source protein:
Neuron navigator 2
Source gene:
NAV2
Class:
DEG_SPOP_SBC_1
Location:
1675:1679
E3 ligase:
SPOP
DEGRON score:
0.8575
ASA_SCORE:
81.64
COIL:
0.888
CONS_SCORE:
0.4627
DSS_SCORE:
0.3258
HELIX:
0.045
FCONS_SCORE:
1.0676
RIG_SCORE:
0.6728
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Y1682H
TCGA-85-8052
LUSC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.25
p.H1668R
TCGA-CV-6956
HNSC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.1389
p.S1673F
TCGA-DD-A4NN
LIHC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.2778
p.V1667F
TCGA-EE-A2MG
SKCM
TCGA
VSSTS
DEG_SPOP_SBC_1
0.1111
p.V1667F
DO37421
SKCM
ICGC
VSSTS
DEG_SPOP_SBC_1
0.1111
p.S1679L
TCGA-EO-A22U
UCEC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.7667
p.K1688T
TCGA-EO-A3AV
UCEC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.1944
p.S1670T
TCGA-V5-A7RB
ESCA
TCGA
VSSTS
DEG_SPOP_SBC_1
0.1944
p.S1670Y
TCGA-V5-A7RB
ESCA
TCGA
VSSTS
DEG_SPOP_SBC_1
0.1944
p.K1689N
DO227709
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.0556
p.A1667S
DO228952
LICA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.1111
p.S1681I
DO229026
LICA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.2778
p.Q1670H
DO45319
LUAD
ICGC
VSSTS
DEG_SPOP_SBC_1
0.1944
p.M1675V
DO218859
SKCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.7208
p.R1675H
ACH-001377
Pancreatic Cancer
CCLE
VSSTS
DEG_SPOP_SBC_1
0.8244
p.V1683I
ACH-001664
Gastric Cancer
CCLE
VSSTS
DEG_SPOP_SBC_1
0.2222
p.T1685A
HCT-116
large_intestine
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with NAV2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15195
Villin-like protein
DEG_SPOP_SBC_1
785:789
VSSTS
SPOP
0.9063
More...
P15336
Cyclic AMP-dependent transcription factor ATF-2
DEG_SPOP_SBC_1
463:467
VSSTS
SPOP
0.9197
More...
P32246
C-C chemokine receptor type 1
DEG_SPOP_SBC_1
339:343
VSSTS
SPOP
0.8417
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
984:988
VSSTS
SPOP
0.9993
More...
P49792
E3 SUMO-protein ligase RanBP2
DEG_SPOP_SBC_1
2497:2501
VSSTS
SPOP
0.9395
More...
P98194
Calcium-transporting ATPase type 2C member 1
DEG_SPOP_SBC_1
909:913
VSSTS
SPOP
0.7013
More...
Q14444
Caprin-1
DEG_SPOP_SBC_1
435:439
VSSTS
SPOP
0.9876
More...
Q4AC94
C2 domain-containing protein 3
DEG_SPOP_SBC_1
150:154
VSSTS
SPOP
0.7703
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
601:605
VSSTS
SPOP
0.9993
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1552:1556
VSSTS
SPOP
0.936
More...
Q8IVL1
Neuron navigator 2
DEG_SPOP_SBC_1
1675:1679
VSSTS
SPOP
0.8575
More...
Q8IZ20
Tissue-resident T-cell transcription regulator protein ZNF683
DEG_SPOP_SBC_1
496:500
VSSTS
SPOP
0.9005
More...
Q8N9Q2
Protein SREK1IP1
DEG_SPOP_SBC_1
44:48
VSSTS
SPOP
0.9807
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
664:668
VSSTS
SPOP
0.9924
More...
Q92833
Protein Jumonji
DEG_SPOP_SBC_1
88:92
VSSTS
SPOP
0.985
More...
Q96P56
Cation channel sperm-associated protein 2
DEG_SPOP_SBC_1
446:450
VSSTS
SPOP
0.9902
More...
Q9C0F0
Putative Polycomb group protein ASXL3
DEG_SPOP_SBC_1
1217:1221
VSSTS
SPOP
0.755
More...
Q9H2Y7
Zinc finger protein 106
DEG_SPOP_SBC_1
1475:1479
VSSTS
SPOP
0.8958
More...
Q9H4G0
Band 4.1-like protein 1
DEG_SPOP_SBC_1
610:614
VSSTS
SPOP
0.92
More...
Q9H7S9
Zinc finger protein 703
DEG_SPOP_SBC_1
175:179
VSSTS
SPOP
0.9944
More...
Q9HCM4
Band 4.1-like protein 5
DEG_SPOP_SBC_1
655:659
VSSTS
SPOP
0.9712
More...
Q9NZQ3
NCK-interacting protein with SH3 domain
DEG_SPOP_SBC_1
218:222
VSSTS
SPOP
0.9877
More...
Q9UER7
Death domain-associated protein 6
DEG_SPOP_SBC_1
608:612
VSSTS
SPOP
0.9192
More...
Q9UGI6
Small conductance calcium-activated potassium channel protein 3
DEG_SPOP_SBC_1
716:720
VSSTS
SPOP
0.9889
More...
Q9Y2W2
WW domain-binding protein 11
DEG_SPOP_SBC_1
249:253
VSSTS
SPOP
0.9947
More...
Q9Y6Q9
Nuclear receptor coactivator 3
DEG_SPOP_SBC_1
667:671
VSSTS
SPOP
0.9399
More...
P52737
Zinc finger protein 136
DEG_SPOP_SBC_1
430:434
VSSTS
SPOP
0.9793
More...
Q2T9L4
Inhibitory synaptic factor 1
DEG_SPOP_SBC_1
78:82
VSSTS
SPOP
0.9827
More...
Q6TDP4
Kelch-like protein 17
DEG_SPOP_SBC_1
637:641
VSSTS
SPOP
0.7137
More...
Q7Z7J5
Developmental pluripotency-associated protein 2
DEG_SPOP_SBC_1
44:48
VSSTS
SPOP
0.9982
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SPOP_SBC_1
1521:1525
VSSTS
SPOP
0.7817
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SPOP_SBC_1
1522:1526
VSSTS
SPOP
0.8024
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SPOP_SBC_1
1521:1525
VSSTS
SPOP
0.7144
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SPOP_SBC_1
1514:1518
VSSTS
SPOP
0.9568
More...
Q5JQS6
Germinal center-associated signaling and motility-like protein
DEG_SPOP_SBC_1
50:54
VSSTS
SPOP
0.9925
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SPOP_SBC_1
1522:1526
VSSTS
SPOP
0.869
More...
C9J202
Putative glycosyltransferase ALG1L2
DEG_SPOP_SBC_1
78:82
VSSTS
SPOP
0.7087
More...
O15544
Protein GR6
DEG_SPOP_SBC_1
16:20
VSSTS
SPOP
0.9463
More...