DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VSSTS
Uniprot ID:
Q8TCU4
Source protein:
Alstrom syndrome protein 1
Source gene:
ALMS1
Class:
DEG_SPOP_SBC_1
Location:
664:668
E3 ligase:
SPOP
DEGRON score:
0.9924
ASA_SCORE:
77.46
COIL:
0.8498
CONS_SCORE:
0.5167
DSS_SCORE:
0.4824
HELIX:
0.0286
FCONS_SCORE:
1.105
RIG_SCORE:
0.6369
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.H668Y
TCGA-34-8454
LUSC
TCGA
VSSTS
DEG_SPOP_SBC_1
0.7229
p.H668Y
DO50094
LUSC
ICGC
VSSTS
DEG_SPOP_SBC_1
0.7229
p.Y678C
DO48370
BLCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.0556
p.V671G
DO229010
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229013
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229016
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229003
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229005
COCA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229505
LAML
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO225404
LAML
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V671G
DO229053
LICA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.T658M
DO233884
GACA
ICGC
VSSTS
DEG_SPOP_SBC_1
0.2778
p.T671S
DO28154
OV
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.Q661K
DO37896
SKCM
ICGC
VSSTS
DEG_SPOP_SBC_1
0.25
p.V664L
SIDM00660
Colorectal Carcinoma
GDSC
VSSTS
DEG_SPOP_SBC_1
0.6765
p.V664L
LS-411N
large_intestine
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.6765
p.V663L
ACH-000985
Colon/Colorectal Cancer
CCLE
VSSTS
DEG_SPOP_SBC_1
0.3056
p.H670R
ACH-001610
Brain Cancer
CCLE
VSSTS
DEG_SPOP_SBC_1
0.2778
p.P673S
COLO-792
skin
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.1944
p.D661Y
NCI-H1355
lung
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.25
p.L670V
JHU-011
upper_aerodigestive_tract
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.2778
p.S671F
LU-139
lung
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.25
p.P673L
COLO-792
skin
COSMIC
VSSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with ALMS1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15195
Villin-like protein
DEG_SPOP_SBC_1
785:789
VSSTS
SPOP
0.9063
More...
P15336
Cyclic AMP-dependent transcription factor ATF-2
DEG_SPOP_SBC_1
463:467
VSSTS
SPOP
0.9197
More...
P32246
C-C chemokine receptor type 1
DEG_SPOP_SBC_1
339:343
VSSTS
SPOP
0.8417
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
984:988
VSSTS
SPOP
0.9993
More...
P49792
E3 SUMO-protein ligase RanBP2
DEG_SPOP_SBC_1
2497:2501
VSSTS
SPOP
0.9395
More...
P98194
Calcium-transporting ATPase type 2C member 1
DEG_SPOP_SBC_1
909:913
VSSTS
SPOP
0.7013
More...
Q14444
Caprin-1
DEG_SPOP_SBC_1
435:439
VSSTS
SPOP
0.9876
More...
Q4AC94
C2 domain-containing protein 3
DEG_SPOP_SBC_1
150:154
VSSTS
SPOP
0.7703
More...
Q5VT52
Regulation of nuclear pre-mRNA domain-containing protein 2
DEG_SPOP_SBC_1
601:605
VSSTS
SPOP
0.9993
More...
Q8IVL0
Neuron navigator 3
DEG_SPOP_SBC_1
1552:1556
VSSTS
SPOP
0.936
More...
Q8IVL1
Neuron navigator 2
DEG_SPOP_SBC_1
1675:1679
VSSTS
SPOP
0.8575
More...
Q8IZ20
Tissue-resident T-cell transcription regulator protein ZNF683
DEG_SPOP_SBC_1
496:500
VSSTS
SPOP
0.9005
More...
Q8N9Q2
Protein SREK1IP1
DEG_SPOP_SBC_1
44:48
VSSTS
SPOP
0.9807
More...
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
664:668
VSSTS
SPOP
0.9924
More...
Q92833
Protein Jumonji
DEG_SPOP_SBC_1
88:92
VSSTS
SPOP
0.985
More...
Q96P56
Cation channel sperm-associated protein 2
DEG_SPOP_SBC_1
446:450
VSSTS
SPOP
0.9902
More...
Q9C0F0
Putative Polycomb group protein ASXL3
DEG_SPOP_SBC_1
1217:1221
VSSTS
SPOP
0.755
More...
Q9H2Y7
Zinc finger protein 106
DEG_SPOP_SBC_1
1475:1479
VSSTS
SPOP
0.8958
More...
Q9H4G0
Band 4.1-like protein 1
DEG_SPOP_SBC_1
610:614
VSSTS
SPOP
0.92
More...
Q9H7S9
Zinc finger protein 703
DEG_SPOP_SBC_1
175:179
VSSTS
SPOP
0.9944
More...
Q9HCM4
Band 4.1-like protein 5
DEG_SPOP_SBC_1
655:659
VSSTS
SPOP
0.9712
More...
Q9NZQ3
NCK-interacting protein with SH3 domain
DEG_SPOP_SBC_1
218:222
VSSTS
SPOP
0.9877
More...
Q9UER7
Death domain-associated protein 6
DEG_SPOP_SBC_1
608:612
VSSTS
SPOP
0.9192
More...
Q9UGI6
Small conductance calcium-activated potassium channel protein 3
DEG_SPOP_SBC_1
716:720
VSSTS
SPOP
0.9889
More...
Q9Y2W2
WW domain-binding protein 11
DEG_SPOP_SBC_1
249:253
VSSTS
SPOP
0.9947
More...
Q9Y6Q9
Nuclear receptor coactivator 3
DEG_SPOP_SBC_1
667:671
VSSTS
SPOP
0.9399
More...
P52737
Zinc finger protein 136
DEG_SPOP_SBC_1
430:434
VSSTS
SPOP
0.9793
More...
Q2T9L4
Inhibitory synaptic factor 1
DEG_SPOP_SBC_1
78:82
VSSTS
SPOP
0.9827
More...
Q6TDP4
Kelch-like protein 17
DEG_SPOP_SBC_1
637:641
VSSTS
SPOP
0.7137
More...
Q7Z7J5
Developmental pluripotency-associated protein 2
DEG_SPOP_SBC_1
44:48
VSSTS
SPOP
0.9982
More...
Q99666
RANBP2-like and GRIP domain-containing protein 5/6
DEG_SPOP_SBC_1
1521:1525
VSSTS
SPOP
0.7817
More...
A6NKT7
RanBP2-like and GRIP domain-containing protein 3
DEG_SPOP_SBC_1
1522:1526
VSSTS
SPOP
0.8024
More...
O14715
RANBP2-like and GRIP domain-containing protein 8
DEG_SPOP_SBC_1
1521:1525
VSSTS
SPOP
0.7144
More...
P0DJD1
RANBP2-like and GRIP domain-containing protein 2
DEG_SPOP_SBC_1
1514:1518
VSSTS
SPOP
0.9568
More...
Q5JQS6
Germinal center-associated signaling and motility-like protein
DEG_SPOP_SBC_1
50:54
VSSTS
SPOP
0.9925
More...
Q7Z3J3
RanBP2-like and GRIP domain-containing protein 4
DEG_SPOP_SBC_1
1522:1526
VSSTS
SPOP
0.869
More...
C9J202
Putative glycosyltransferase ALG1L2
DEG_SPOP_SBC_1
78:82
VSSTS
SPOP
0.7087
More...
O15544
Protein GR6
DEG_SPOP_SBC_1
16:20
VSSTS
SPOP
0.9463
More...