DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVSSS
Uniprot ID:
P54259
Source protein:
Atrophin-1
Source gene:
ATN1
Class:
DEG_SPOP_SBC_1
Location:
567:571
E3 ligase:
SPOP
DEGRON score:
0.8885
ASA_SCORE:
90.74
COIL:
0.959
CONS_SCORE:
0.5222
DSS_SCORE:
0.7181
HELIX:
0.0216
FCONS_SCORE:
0.8514
RIG_SCORE:
0.487
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S571F
TCGA-4Z-AA84
BLCA
TCGA
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S571F
DO218988
BLCA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S571Y
TCGA-CV-5977
HNSC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.712
p.S571Y
DO14403
HNSC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.712
p.G562S
TCGA-DA-A1I0
SKCM
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1944
p.G562S
DO37719
SKCM
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1944
p.P566L
TCGA-DH-5140
LGG
TCGA
PVSSS
DEG_SPOP_SBC_1
0.3056
p.P566L
DO22701
LGG
ICGC
PVSSS
DEG_SPOP_SBC_1
0.3056
p.Q580E
TCGA-EW-A1J5
BRCA
TCGA
PVSSS
DEG_SPOP_SBC_1
0.0833
p.Q580E
DO6144
BRCA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.0833
p.P566S
TCGA-EY-A1GT
UCEC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.3056
p.P566S
DO40936
UCEC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.3056
p.S559I
TCGA-IB-7651
PAAD
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1111
p.S559I
DO46657
PAAD
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1111
p.G562V
DO229006
LICA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1944
p.S572Y
SIDM00614
Hepatocellular Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.3056
p.G565D
SIDM00680
Colorectal Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.2778
p.G565D
ACH-000957
Colon/Colorectal Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.2778
p.G565D
LS-180
large_intestine
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.2778
p.S571C
SIDM00506
Small Cell Lung Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.7541
p.S571C
ACH-000508
Lung Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.7541
p.S571C
COR-L88
lung
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.7541
p.P563H
SIDM00014
Colorectal Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.2222
p.P563H
LIM1215
large_intestine
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.2222
p.S559N
SIDM00487
Colorectal Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.1111
p.S559N
ACH-000963
Colon/Colorectal Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.1111
p.S559N
CCK-81
large_intestine
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.1111
Drug responses associated with ATN1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60381
HMG box-containing protein 1
DEG_SPOP_SBC_1
154:158
PVSSS
SPOP
0.9698
More...
O95628
CCR4-NOT transcription complex subunit 4
DEG_SPOP_SBC_1
380:384
PVSSS
SPOP
0.8257
More...
P07196
Neurofilament light polypeptide
DEG_SPOP_SBC_1
46:50
PVSSS
SPOP
0.8899
More...
P19793
Retinoic acid receptor RXR-alpha
DEG_SPOP_SBC_1
100:104
PVSSS
SPOP
0.9322
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
599:603
PVSSS
SPOP
0.9897
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1234:1238
PVSSS
SPOP
0.8806
More...
P51825
AF4/FMR2 family member 1
DEG_SPOP_SBC_1
869:873
PVSSS
SPOP
0.7599
More...
P54259
Atrophin-1
DEG_SPOP_SBC_1
567:571
PVSSS
SPOP
0.8885
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
590:594
PVSSS
SPOP
0.8983
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1009:1013
PVSSS
SPOP
0.7108
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1582:1586
PVSSS
SPOP
0.9597
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1810:1814
PVSSS
SPOP
0.9944
More...
Q15772
Striated muscle preferentially expressed protein kinase
DEG_SPOP_SBC_1
2893:2897
PVSSS
SPOP
0.9847
More...
Q2NKQ1
Small G protein signaling modulator 1
DEG_SPOP_SBC_1
916:920
PVSSS
SPOP
0.9081
More...
Q5T6F2
Ubiquitin-associated protein 2
DEG_SPOP_SBC_1
631:635
PVSSS
SPOP
0.9929
More...
Q6AI39
BRD4-interacting chromatin-remodeling complex-associated protein-like
DEG_SPOP_SBC_1
588:592
PVSSS
SPOP
0.6309
More...
Q6ZN04
RNA-binding protein MEX3B
DEG_SPOP_SBC_1
391:395
PVSSS
SPOP
0.9174
More...
Q6ZNA4
E3 ubiquitin-protein ligase Arkadia
DEG_SPOP_SBC_1
593:597
PVSSS
SPOP
0.7583
More...
Q6ZP82
Coiled-coil domain-containing protein 141
DEG_SPOP_SBC_1
1237:1241
PVSSS
SPOP
0.926
More...
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_SPOP_SBC_1
1586:1590
PVSSS
SPOP
0.8722
More...
Q7Z4V5
Hepatoma-derived growth factor-related protein 2
DEG_SPOP_SBC_1
97:101
PVSSS
SPOP
0.8909
More...
Q8NDF8
Terminal nucleotidyltransferase 4B
DEG_SPOP_SBC_1
445:449
PVSSS
SPOP
0.9935
More...
Q8NEY1
Neuron navigator 1
DEG_SPOP_SBC_1
693:697
PVSSS
SPOP
0.9862
More...
Q92613
Protein Jade-3
DEG_SPOP_SBC_1
6:10
PVSSS
SPOP
0.9389
More...
Q92793
CREB-binding protein
DEG_SPOP_SBC_1
891:895
PVSSS
SPOP
0.9523
More...
Q9C0C6
CLOCK-interacting pacemaker
DEG_SPOP_SBC_1
245:249
PVSSS
SPOP
0.9936
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1701:1705
PVSSS
SPOP
0.996
More...
Q9NY27
Serine/threonine-protein phosphatase 4 regulatory subunit 2
DEG_SPOP_SBC_1
369:373
PVSSS
SPOP
0.8095
More...
Q9UK61
Protein TASOR
DEG_SPOP_SBC_1
1122:1126
PVSSS
SPOP
0.992
More...
Q9ULM3
YEATS domain-containing protein 2
DEG_SPOP_SBC_1
977:981
PVSSS
SPOP
0.9676
More...
Q8TDY8
Immunoglobulin superfamily DCC subclass member 4
DEG_SPOP_SBC_1
1245:1249
PVSSS
SPOP
0.9694
More...
A0AUZ9
KAT8 regulatory NSL complex subunit 1-like protein
DEG_SPOP_SBC_1
208:212
PVSSS
SPOP
0.5228
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
306:310
PVSSS
SPOP
0.9847
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
446:450
PVSSS
SPOP
0.94
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
481:485
PVSSS
SPOP
0.9669
More...
E7EW31
Proline-rich basic protein 1
DEG_SPOP_SBC_1
337:341
PVSSS
SPOP
0.9791
More...