DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PVSSS
Uniprot ID:
Q6ZP82
Source protein:
Coiled-coil domain-containing protein 141
Source gene:
CCDC141
Class:
DEG_SPOP_SBC_1
Location:
1237:1241
E3 ligase:
SPOP
DEGRON score:
0.926
ASA_SCORE:
66.54
COIL:
0.7064
CONS_SCORE:
0
DSS_SCORE:
0.5538
HELIX:
0.0866
FCONS_SCORE:
0
RIG_SCORE:
0.6631
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M1232V
TCGA-52-7809
LUSC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1944
p.M1232V
DO26746
LUSC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1944
p.A1228V
TCGA-A5-A1OF
UCEC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.0833
p.A1228V
DO42568
UCEC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.0833
p.S1243G
TCGA-AG-3891
READ
TCGA
PVSSS
DEG_SPOP_SBC_1
0.2778
p.S1243G
DO36388
READ
ICGC
PVSSS
DEG_SPOP_SBC_1
0.2778
p.P1237H
TCGA-AX-A06F
UCEC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.7694
p.P1237H
DO41752
UCEC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.7694
p.S1241F
TCGA-D9-A6EC
SKCM
TCGA
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S1241F
DO220851
MELA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S1241F
DO50291
SKCM
ICGC
PVSSS
DEG_SPOP_SBC_1
0.7982
p.G1250W
TCGA-DA-A960
SKCM
TCGA
PVSSS
DEG_SPOP_SBC_1
0.0833
p.G1250W
DO219482
SKCM
ICGC
PVSSS
DEG_SPOP_SBC_1
0.0833
p.E1235K
TCGA-EE-A29E
SKCM
TCGA
PVSSS
DEG_SPOP_SBC_1
0.2778
p.E1235K
DO37831
SKCM
ICGC
PVSSS
DEG_SPOP_SBC_1
0.2778
p.M1232I
TCGA-EK-A2RK
CESC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1944
p.M1232I
DO49952
CESC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1944
p.S1230C
DO224844
BRCA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1389
p.H1245Y
DO220862
MELA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.2222
p.V1238F
SIDM00269
Ewing's Sarcoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.5957
p.V1238F
ACH-002108
Bone Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.5957
p.V1238F
ES7
bone
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.5957
p.G1250V
SIDM00755
Non-Small Cell Lung Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.0833
p.G1250V
ACH-000888
Lung Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.0833
p.G1250V
NCI-H1793
lung
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.0833
p.L1227I
SIDM00901
Endometrial Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.0556
p.L1227I
ACH-000940
Endometrial/Uterine Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.0556
p.L1227I
AN3-CA
endometrium
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.0556
p.S1240F
SIDM00115
Head and Neck Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S1240F
ACH-002298
Head and Neck Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.7982
p.S1240F
PCI-6A
upper_aerodigestive_tract
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.7982
p.V1251L
SIDM01590
Breast Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with CCDC141 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60381
HMG box-containing protein 1
DEG_SPOP_SBC_1
154:158
PVSSS
SPOP
0.9698
More...
O95628
CCR4-NOT transcription complex subunit 4
DEG_SPOP_SBC_1
380:384
PVSSS
SPOP
0.8257
More...
P07196
Neurofilament light polypeptide
DEG_SPOP_SBC_1
46:50
PVSSS
SPOP
0.8899
More...
P19793
Retinoic acid receptor RXR-alpha
DEG_SPOP_SBC_1
100:104
PVSSS
SPOP
0.9322
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
599:603
PVSSS
SPOP
0.9897
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1234:1238
PVSSS
SPOP
0.8806
More...
P51825
AF4/FMR2 family member 1
DEG_SPOP_SBC_1
869:873
PVSSS
SPOP
0.7599
More...
P54259
Atrophin-1
DEG_SPOP_SBC_1
567:571
PVSSS
SPOP
0.8885
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
590:594
PVSSS
SPOP
0.8983
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1009:1013
PVSSS
SPOP
0.7108
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1582:1586
PVSSS
SPOP
0.9597
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1810:1814
PVSSS
SPOP
0.9944
More...
Q15772
Striated muscle preferentially expressed protein kinase
DEG_SPOP_SBC_1
2893:2897
PVSSS
SPOP
0.9847
More...
Q2NKQ1
Small G protein signaling modulator 1
DEG_SPOP_SBC_1
916:920
PVSSS
SPOP
0.9081
More...
Q5T6F2
Ubiquitin-associated protein 2
DEG_SPOP_SBC_1
631:635
PVSSS
SPOP
0.9929
More...
Q6AI39
BRD4-interacting chromatin-remodeling complex-associated protein-like
DEG_SPOP_SBC_1
588:592
PVSSS
SPOP
0.6309
More...
Q6ZN04
RNA-binding protein MEX3B
DEG_SPOP_SBC_1
391:395
PVSSS
SPOP
0.9174
More...
Q6ZNA4
E3 ubiquitin-protein ligase Arkadia
DEG_SPOP_SBC_1
593:597
PVSSS
SPOP
0.7583
More...
Q6ZP82
Coiled-coil domain-containing protein 141
DEG_SPOP_SBC_1
1237:1241
PVSSS
SPOP
0.926
More...
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_SPOP_SBC_1
1586:1590
PVSSS
SPOP
0.8722
More...
Q7Z4V5
Hepatoma-derived growth factor-related protein 2
DEG_SPOP_SBC_1
97:101
PVSSS
SPOP
0.8909
More...
Q8NDF8
Terminal nucleotidyltransferase 4B
DEG_SPOP_SBC_1
445:449
PVSSS
SPOP
0.9935
More...
Q8NEY1
Neuron navigator 1
DEG_SPOP_SBC_1
693:697
PVSSS
SPOP
0.9862
More...
Q92613
Protein Jade-3
DEG_SPOP_SBC_1
6:10
PVSSS
SPOP
0.9389
More...
Q92793
CREB-binding protein
DEG_SPOP_SBC_1
891:895
PVSSS
SPOP
0.9523
More...
Q9C0C6
CLOCK-interacting pacemaker
DEG_SPOP_SBC_1
245:249
PVSSS
SPOP
0.9936
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1701:1705
PVSSS
SPOP
0.996
More...
Q9NY27
Serine/threonine-protein phosphatase 4 regulatory subunit 2
DEG_SPOP_SBC_1
369:373
PVSSS
SPOP
0.8095
More...
Q9UK61
Protein TASOR
DEG_SPOP_SBC_1
1122:1126
PVSSS
SPOP
0.992
More...
Q9ULM3
YEATS domain-containing protein 2
DEG_SPOP_SBC_1
977:981
PVSSS
SPOP
0.9676
More...
Q8TDY8
Immunoglobulin superfamily DCC subclass member 4
DEG_SPOP_SBC_1
1245:1249
PVSSS
SPOP
0.9694
More...
A0AUZ9
KAT8 regulatory NSL complex subunit 1-like protein
DEG_SPOP_SBC_1
208:212
PVSSS
SPOP
0.5228
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
306:310
PVSSS
SPOP
0.9847
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
446:450
PVSSS
SPOP
0.94
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
481:485
PVSSS
SPOP
0.9669
More...
E7EW31
Proline-rich basic protein 1
DEG_SPOP_SBC_1
337:341
PVSSS
SPOP
0.9791
More...