DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PVSSS
Uniprot ID:
Q6ZN04
Source protein:
RNA-binding protein MEX3B
Source gene:
MEX3B
Class:
DEG_SPOP_SBC_1
Location:
391:395
E3 ligase:
SPOP
DEGRON score:
0.9174
ASA_SCORE:
66.64
COIL:
0.8626
CONS_SCORE:
0.4768
DSS_SCORE:
0.5125
HELIX:
0.0634
FCONS_SCORE:
1.1422
RIG_SCORE:
0.629
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S402L
TCGA-63-A5ML
LUSC
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1389
p.S402L
DO219151
LUSC
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1389
p.S402P
TCGA-AB-2849
LAML
TCGA
PVSSS
DEG_SPOP_SBC_1
0.1389
p.S402P
DO21403
LAML
ICGC
PVSSS
DEG_SPOP_SBC_1
0.1389
p.S394Y
TCGA-AN-A046
BRCA
TCGA
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
DO1285
BRCA
ICGC
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
SIDM00781
Colorectal Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
SIDM00780
Colorectal Carcinoma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
SIDM01574
Plasma Cell Myeloma
GDSC
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
ACH-000588
Myeloma
CCLE
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
ACH-000967
Colon/Colorectal Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
ACH-001199
Colon/Colorectal Cancer
CCLE
PVSSS
DEG_SPOP_SBC_1
0.712
p.S394Y
SNU-C2B
large_intestine
COSMIC
PVSSS
DEG_SPOP_SBC_1
0.712
p.V392I
TCGA-HU-A4H3
STAD
TCGA
PVSSS
DEG_SPOP_SBC_1
0.5965
p.V392I
DO47903
STAD
ICGC
PVSSS
DEG_SPOP_SBC_1
0.5965
Drug responses associated with MEX3B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60381
HMG box-containing protein 1
DEG_SPOP_SBC_1
154:158
PVSSS
SPOP
0.9698
More...
O95628
CCR4-NOT transcription complex subunit 4
DEG_SPOP_SBC_1
380:384
PVSSS
SPOP
0.8257
More...
P07196
Neurofilament light polypeptide
DEG_SPOP_SBC_1
46:50
PVSSS
SPOP
0.8899
More...
P19793
Retinoic acid receptor RXR-alpha
DEG_SPOP_SBC_1
100:104
PVSSS
SPOP
0.9322
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
599:603
PVSSS
SPOP
0.9897
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
1234:1238
PVSSS
SPOP
0.8806
More...
P51825
AF4/FMR2 family member 1
DEG_SPOP_SBC_1
869:873
PVSSS
SPOP
0.7599
More...
P54259
Atrophin-1
DEG_SPOP_SBC_1
567:571
PVSSS
SPOP
0.8885
More...
P55197
Protein AF-10
DEG_SPOP_SBC_1
590:594
PVSSS
SPOP
0.8983
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1009:1013
PVSSS
SPOP
0.7108
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1582:1586
PVSSS
SPOP
0.9597
More...
Q14686
Nuclear receptor coactivator 6
DEG_SPOP_SBC_1
1810:1814
PVSSS
SPOP
0.9944
More...
Q15772
Striated muscle preferentially expressed protein kinase
DEG_SPOP_SBC_1
2893:2897
PVSSS
SPOP
0.9847
More...
Q2NKQ1
Small G protein signaling modulator 1
DEG_SPOP_SBC_1
916:920
PVSSS
SPOP
0.9081
More...
Q5T6F2
Ubiquitin-associated protein 2
DEG_SPOP_SBC_1
631:635
PVSSS
SPOP
0.9929
More...
Q6AI39
BRD4-interacting chromatin-remodeling complex-associated protein-like
DEG_SPOP_SBC_1
588:592
PVSSS
SPOP
0.6309
More...
Q6ZN04
RNA-binding protein MEX3B
DEG_SPOP_SBC_1
391:395
PVSSS
SPOP
0.9174
More...
Q6ZNA4
E3 ubiquitin-protein ligase Arkadia
DEG_SPOP_SBC_1
593:597
PVSSS
SPOP
0.7583
More...
Q6ZP82
Coiled-coil domain-containing protein 141
DEG_SPOP_SBC_1
1237:1241
PVSSS
SPOP
0.926
More...
Q71F56
Mediator of RNA polymerase II transcription subunit 13-like
DEG_SPOP_SBC_1
1586:1590
PVSSS
SPOP
0.8722
More...
Q7Z4V5
Hepatoma-derived growth factor-related protein 2
DEG_SPOP_SBC_1
97:101
PVSSS
SPOP
0.8909
More...
Q8NDF8
Terminal nucleotidyltransferase 4B
DEG_SPOP_SBC_1
445:449
PVSSS
SPOP
0.9935
More...
Q8NEY1
Neuron navigator 1
DEG_SPOP_SBC_1
693:697
PVSSS
SPOP
0.9862
More...
Q92613
Protein Jade-3
DEG_SPOP_SBC_1
6:10
PVSSS
SPOP
0.9389
More...
Q92793
CREB-binding protein
DEG_SPOP_SBC_1
891:895
PVSSS
SPOP
0.9523
More...
Q9C0C6
CLOCK-interacting pacemaker
DEG_SPOP_SBC_1
245:249
PVSSS
SPOP
0.9936
More...
Q9NSI6
Bromodomain and WD repeat-containing protein 1
DEG_SPOP_SBC_1
1701:1705
PVSSS
SPOP
0.996
More...
Q9NY27
Serine/threonine-protein phosphatase 4 regulatory subunit 2
DEG_SPOP_SBC_1
369:373
PVSSS
SPOP
0.8095
More...
Q9UK61
Protein TASOR
DEG_SPOP_SBC_1
1122:1126
PVSSS
SPOP
0.992
More...
Q9ULM3
YEATS domain-containing protein 2
DEG_SPOP_SBC_1
977:981
PVSSS
SPOP
0.9676
More...
Q8TDY8
Immunoglobulin superfamily DCC subclass member 4
DEG_SPOP_SBC_1
1245:1249
PVSSS
SPOP
0.9694
More...
A0AUZ9
KAT8 regulatory NSL complex subunit 1-like protein
DEG_SPOP_SBC_1
208:212
PVSSS
SPOP
0.5228
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
306:310
PVSSS
SPOP
0.9847
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
446:450
PVSSS
SPOP
0.94
More...
O60732
Melanoma-associated antigen C1
DEG_SPOP_SBC_1
481:485
PVSSS
SPOP
0.9669
More...
E7EW31
Proline-rich basic protein 1
DEG_SPOP_SBC_1
337:341
PVSSS
SPOP
0.9791
More...