DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PGTSS
Uniprot ID:
Q96IM9
Source protein:
DPY30 domain-containing protein 2
Source gene:
DYDC2
Class:
DEG_SPOP_SBC_1
Location:
123:127
E3 ligase:
SPOP
DEGRON score:
0.9785
ASA_SCORE:
77.78
COIL:
0.8778
CONS_SCORE:
0.6377
DSS_SCORE:
0.5958
HELIX:
0.0982
FCONS_SCORE:
1.019
RIG_SCORE:
0.6684
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P137A
TCGA-35-3615
LUAD
TCGA
PGTSS
DEG_SPOP_SBC_1
0.0556
p.T113M
TCGA-BR-6452
STAD
TCGA
PGTSS
DEG_SPOP_SBC_1
0.0556
p.F118C
TCGA-BR-8360
STAD
TCGA
PGTSS
DEG_SPOP_SBC_1
0.3056
p.E121K
TCGA-CV-7180
HNSC
TCGA
PGTSS
DEG_SPOP_SBC_1
0.2778
p.A130V
TCGA-D1-A1O7
UCEC
TCGA
PGTSS
DEG_SPOP_SBC_1
0.25
p.L131V
TCGA-FI-A2D0
UCEC
TCGA
PGTSS
DEG_SPOP_SBC_1
0.2222
p.P123A
DO23627
LUAD
ICGC
PGTSS
DEG_SPOP_SBC_1
0.6392
p.E120K
DO222402
MELA
ICGC
PGTSS
DEG_SPOP_SBC_1
0.25
p.P137S
DO37406
SKCM
ICGC
PGTSS
DEG_SPOP_SBC_1
0.0556
p.P130S
DO41644
UCEC
ICGC
PGTSS
DEG_SPOP_SBC_1
0.25
p.T125N
DO41235
UCEC
ICGC
PGTSS
DEG_SPOP_SBC_1
0.7055
p.L117V
DO43891
UCEC
ICGC
PGTSS
DEG_SPOP_SBC_1
0.1667
p.A116V
DO41139
UCEC
ICGC
PGTSS
DEG_SPOP_SBC_1
0.1389
p.T125A
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
PGTSS
DEG_SPOP_SBC_1
0.7139
Drug responses associated with DYDC2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95071
E3 ubiquitin-protein ligase UBR5
DEG_SPOP_SBC_1
683:687
PGTSS
SPOP
0.9947
More...
P09871
Complement C1s subcomponent
DEG_SPOP_SBC_1
551:555
PGTSS
SPOP
0.8928
More...
P25054
Adenomatous polyposis coli protein
DEG_SPOP_SBC_1
870:874
PGTSS
SPOP
0.9993
More...
P29400
Collagen alpha-5
DEG_SPOP_SBC_1
1453:1457
PGTSS
SPOP
0.8142
More...
P78363
Retinal-specific phospholipid-transporting ATPase ABCA4
DEG_SPOP_SBC_1
1948:1952
PGTSS
SPOP
0.5066
More...
Q53H80
Akirin-2
DEG_SPOP_SBC_1
126:130
PGTSS
SPOP
0.9884
More...
Q5TDH0
Protein DDI1 homolog 2
DEG_SPOP_SBC_1
102:106
PGTSS
SPOP
0.9694
More...
Q659C4
La-related protein 1B
DEG_SPOP_SBC_1
662:666
PGTSS
SPOP
0.9973
More...
Q6RI45
Bromodomain and WD repeat-containing protein 3
DEG_SPOP_SBC_1
1281:1285
PGTSS
SPOP
0.8916
More...
Q7L014
Probable ATP-dependent RNA helicase DDX46
DEG_SPOP_SBC_1
833:837
PGTSS
SPOP
0.9931
More...
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SPOP_SBC_1
139:143
PGTSS
SPOP
0.9971
More...
Q8IXJ9
Polycomb group protein ASXL1
DEG_SPOP_SBC_1
467:471
PGTSS
SPOP
0.9991
More...
Q8NDX5
Polyhomeotic-like protein 3
DEG_SPOP_SBC_1
7:11
PGTSS
SPOP
0.7536
More...
Q8TDZ2
[F-actin]-monooxygenase MICAL1
DEG_SPOP_SBC_1
626:630
PGTSS
SPOP
0.9994
More...
Q8WTU0
Protein DDI1 homolog 1
DEG_SPOP_SBC_1
102:106
PGTSS
SPOP
0.9889
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7738:7742
PGTSS
SPOP
0.9963
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8317:8321
PGTSS
SPOP
0.9624
More...
Q96G74
OTU domain-containing protein 5
DEG_SPOP_SBC_1
493:497
PGTSS
SPOP
0.9984
More...
Q96L73
Histone-lysine N-methyltransferase, H3 lysine-36 specific
DEG_SPOP_SBC_1
296:300
PGTSS
SPOP
0.9951
More...
Q96PY5
Formin-like protein 2
DEG_SPOP_SBC_1
598:602
PGTSS
SPOP
0.9832
More...
Q96RE7
Nucleus accumbens-associated protein 1
DEG_SPOP_SBC_1
264:268
PGTSS
SPOP
0.9975
More...
Q9H2D6
TRIO and F-actin-binding protein
DEG_SPOP_SBC_1
864:868
PGTSS
SPOP
0.9926
More...
Q9HB58
Sp110 nuclear body protein
DEG_SPOP_SBC_1
159:163
PGTSS
SPOP
0.9408
More...
Q9NYI0
PH and SEC7 domain-containing protein 3
DEG_SPOP_SBC_1
372:376
PGTSS
SPOP
0.9983
More...
Q9P202
Whirlin
DEG_SPOP_SBC_1
637:641
PGTSS
SPOP
0.9454
More...
Q9P2N6
KAT8 regulatory NSL complex subunit 3
DEG_SPOP_SBC_1
599:603
PGTSS
SPOP
0.5271
More...
Q9UIB8
SLAM family member 5
DEG_SPOP_SBC_1
336:340
PGTSS
SPOP
0.9897
More...
Q9Y4H2
Insulin receptor substrate 2
DEG_SPOP_SBC_1
963:967
PGTSS
SPOP
0.9939
More...
Q96AC6
Kinesin-like protein KIFC2
DEG_SPOP_SBC_1
418:422
PGTSS
SPOP
0.9951
More...
Q96SC8
Doublesex- and mab-3-related transcription factor A2
DEG_SPOP_SBC_1
226:230
PGTSS
SPOP
0.824
More...
Q8NGY2
Olfactory receptor 6K2
DEG_SPOP_SBC_1
317:321
PGTSS
SPOP
0.8496
More...
Q96IM9
DPY30 domain-containing protein 2
DEG_SPOP_SBC_1
123:127
PGTSS
SPOP
0.9785
More...
Q9NW07
Zinc finger protein 358
DEG_SPOP_SBC_1
454:458
PGTSS
SPOP
0.9051
More...
Q6IPT2
Golgi associated RAB2 interactor protein 5A
DEG_SPOP_SBC_1
15:19
PGTSS
SPOP
0.9651
More...