DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PASST
Uniprot ID:
Q5T7P8
Source protein:
Synaptotagmin-6
Source gene:
SYT6
Class:
DEG_SPOP_SBC_1
Location:
166:170
E3 ligase:
SPOP
DEGRON score:
0.9966
ASA_SCORE:
68.12
COIL:
0.8944
CONS_SCORE:
0.4952
DSS_SCORE:
0.729
HELIX:
0.0652
FCONS_SCORE:
1.0669
RIG_SCORE:
0.6006
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R164H
TCGA-56-5897
LUSC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.R164H
TCGA-AJ-A3OJ
UCEC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.R164H
TCGA-CM-5349
COAD
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.R164H
TCGA-CN-5366
HNSC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.R164H
TCGA-CR-7377
HNSC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.R164H
SIDM01943
Colorectal Carcinoma
GDSC
PASST
DEG_SPOP_SBC_1
0.7222
p.K167N
TCGA-AD-6889
COAD
TCGA
PASST
DEG_SPOP_SBC_1
0.6918
p.A173V
TCGA-AP-A1DK
UCEC
TCGA
PASST
DEG_SPOP_SBC_1
0.25
p.R164C
TCGA-B5-A0K4
UCEC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.A168V
TCGA-DU-6392
LGG
TCGA
PASST
DEG_SPOP_SBC_1
0.6936
p.R164L
TCGA-P3-A6T6
HNSC
TCGA
PASST
DEG_SPOP_SBC_1
0.7222
p.K174N
TCGA-XK-AAIW
PRAD
TCGA
PASST
DEG_SPOP_SBC_1
0.2222
p.R161W
DO222507
COCA
ICGC
PASST
DEG_SPOP_SBC_1
0.1944
p.R177C
DO233751
GACA
ICGC
PASST
DEG_SPOP_SBC_1
0.1389
p.R177C
ACH-000914
Lymphoma
CCLE
PASST
DEG_SPOP_SBC_1
0.1389
p.R177C
HT
haematopoietic_and_lymphoid_tissue
COSMIC
PASST
DEG_SPOP_SBC_1
0.1389
p.R171M
DO233858
GACA
ICGC
PASST
DEG_SPOP_SBC_1
0.3056
p.A167E
DO229028
LICA
ICGC
PASST
DEG_SPOP_SBC_1
0.659
p.L179M
DO26240
LUAD
ICGC
PASST
DEG_SPOP_SBC_1
0.0833
p.R158Q
DO38404
STAD
ICGC
PASST
DEG_SPOP_SBC_1
0.1111
p.R158L
DO51783
STAD
ICGC
PASST
DEG_SPOP_SBC_1
0.1111
p.A167V
DO42713
UCEC
ICGC
PASST
DEG_SPOP_SBC_1
0.5825
p.E159K
SIDM01199
Hepatocellular Carcinoma
GDSC
PASST
DEG_SPOP_SBC_1
0.1389
p.E159K
SIDM00242
Osteosarcoma
GDSC
PASST
DEG_SPOP_SBC_1
0.1389
p.S180F
SIDM01032
Esophageal Squamous Cell Carcinoma
GDSC
PASST
DEG_SPOP_SBC_1
0.0556
p.S180F
KYSE-140
oesophagus
COSMIC
PASST
DEG_SPOP_SBC_1
0.0556
p.S179R
SIDM00839
Colorectal Carcinoma
GDSC
PASST
DEG_SPOP_SBC_1
0.0833
p.T173M
ACH-000999
Colon/Colorectal Cancer
CCLE
PASST
DEG_SPOP_SBC_1
0.25
p.T173M
SNU-1040
large_intestine
COSMIC
PASST
DEG_SPOP_SBC_1
0.25
Drug responses associated with SYT6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PASST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00151
PDZ and LIM domain protein 1
DEG_SPOP_SBC_1
131:135
PASST
SPOP
0.996
More...
O00512
B-cell CLL/lymphoma 9 protein
DEG_SPOP_SBC_1
292:296
PASST
SPOP
0.9897
More...
O00592
Podocalyxin
DEG_SPOP_SBC_1
284:288
PASST
SPOP
0.9958
More...
O15014
Zinc finger protein 609
DEG_SPOP_SBC_1
422:426
PASST
SPOP
0.9985
More...
O43278
Kunitz-type protease inhibitor 1
DEG_SPOP_SBC_1
506:510
PASST
SPOP
0.8248
More...
O43439
Protein CBFA2T2
DEG_SPOP_SBC_1
94:98
PASST
SPOP
0.9026
More...
P35658
Nuclear pore complex protein Nup214
DEG_SPOP_SBC_1
1759:1763
PASST
SPOP
0.8173
More...
P35869
Aryl hydrocarbon receptor
DEG_SPOP_SBC_1
471:475
PASST
SPOP
0.9789
More...
P55317
Hepatocyte nuclear factor 3-alpha
DEG_SPOP_SBC_1
352:356
PASST
SPOP
0.9993
More...
P55318
Hepatocyte nuclear factor 3-gamma
DEG_SPOP_SBC_1
276:280
PASST
SPOP
0.9862
More...
Q07157
Tight junction protein ZO-1
DEG_SPOP_SBC_1
938:942
PASST
SPOP
0.9965
More...
Q13233
Mitogen-activated protein kinase kinase kinase 1
DEG_SPOP_SBC_1
85:89
PASST
SPOP
0.795
More...
Q5T7P8
Synaptotagmin-6
DEG_SPOP_SBC_1
166:170
PASST
SPOP
0.9966
More...
Q6H8Q1
Actin-binding LIM protein 2
DEG_SPOP_SBC_1
287:291
PASST
SPOP
0.9851
More...
Q7Z4V0
Zinc finger protein 438
DEG_SPOP_SBC_1
220:224
PASST
SPOP
0.996
More...
Q86YR7
Probable guanine nucleotide exchange factor MCF2L2
DEG_SPOP_SBC_1
997:1001
PASST
SPOP
0.999
More...
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SPOP_SBC_1
455:459
PASST
SPOP
0.9441
More...
Q8IWZ8
SURP and G-patch domain-containing protein 1
DEG_SPOP_SBC_1
354:358
PASST
SPOP
0.9845
More...
Q8IZF6
Adhesion G-protein coupled receptor G4
DEG_SPOP_SBC_1
1155:1159
PASST
SPOP
0.7698
More...
Q8N122
Regulatory-associated protein of mTOR
DEG_SPOP_SBC_1
879:883
PASST
SPOP
0.9966
More...
Q8N3J3
Homologous recombination OB-fold protein
DEG_SPOP_SBC_1
82:86
PASST
SPOP
0.9981
More...
Q8WXH0
Nesprin-2
DEG_SPOP_SBC_1
6481:6485
PASST
SPOP
0.9986
More...
Q96M63
Outer dynein arm-docking complex subunit 1
DEG_SPOP_SBC_1
654:658
PASST
SPOP
0.7201
More...
Q99717
Mothers against decapentaplegic homolog 5
DEG_SPOP_SBC_1
197:201
PASST
SPOP
0.992
More...
Q9BQL6
Fermitin family homolog 1
DEG_SPOP_SBC_1
198:202
PASST
SPOP
0.9238
More...
Q9H0C8
Integrin-linked kinase-associated serine/threonine phosphatase 2C
DEG_SPOP_SBC_1
34:38
PASST
SPOP
0.9084
More...
Q9H9P5
Putative E3 ubiquitin-protein ligase UNKL
DEG_SPOP_SBC_1
409:413
PASST
SPOP
0.8044
More...
Q9HC52
Chromobox protein homolog 8
DEG_SPOP_SBC_1
132:136
PASST
SPOP
0.981
More...
Q9NR12
PDZ and LIM domain protein 7
DEG_SPOP_SBC_1
201:205
PASST
SPOP
0.9989
More...
Q9NUT2
Mitochondrial potassium channel ATP-binding subunit
DEG_SPOP_SBC_1
120:124
PASST
SPOP
0.6141
More...
Q9NYV4
Cyclin-dependent kinase 12
DEG_SPOP_SBC_1
577:581
PASST
SPOP
0.9633
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1122:1126
PASST
SPOP
0.7308
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1568:1572
PASST
SPOP
0.6922
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2205:2209
PASST
SPOP
0.8831
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2260:2264
PASST
SPOP
0.8831
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2734:2738
PASST
SPOP
0.7308
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3125:3129
PASST
SPOP
0.9182
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4208:4212
PASST
SPOP
0.8995
More...
Q9Y2H9
Microtubule-associated serine/threonine-protein kinase 1
DEG_SPOP_SBC_1
1159:1163
PASST
SPOP
0.9943
More...
Q9Y6C2
EMILIN-1
DEG_SPOP_SBC_1
139:143
PASST
SPOP
0.9942
More...
P52746
Zinc finger protein 142
DEG_SPOP_SBC_1
10:14
PASST
SPOP
0.9427
More...
Q2M3G4
Protein Shroom1
DEG_SPOP_SBC_1
13:17
PASST
SPOP
0.9978
More...
D6RIA3
Uncharacterized protein C4orf54
DEG_SPOP_SBC_1
1735:1739
PASST
SPOP
0.9207
More...
Q5T5J6
Transcriptional protein SWT1
DEG_SPOP_SBC_1
36:40
PASST
SPOP
0.9757
More...
Q9C0I3
Serine-rich coiled-coil domain-containing protein 1
DEG_SPOP_SBC_1
650:654
PASST
SPOP
0.6155
More...
Q6ZNG2
Homeobox protein DBX2
DEG_SPOP_SBC_1
159:163
PASST
SPOP
0.861
More...