DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VPSSS
Uniprot ID:
Q15434
Source protein:
RNA-binding motif, single-stranded-interacting protein 2
Source gene:
RBMS2
Class:
DEG_SPOP_SBC_1
Location:
373:377
E3 ligase:
SPOP
DEGRON score:
0.992
ASA_SCORE:
83.56
COIL:
0.9588
CONS_SCORE:
0.4977
DSS_SCORE:
0.4285
HELIX:
0.0144
FCONS_SCORE:
1.1049
RIG_SCORE:
0.6728
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I367T
TCGA-AP-A0LL
UCEC
TCGA
VPSSS
DEG_SPOP_SBC_1
0.1667
p.I367T
DO41446
UCEC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.1667
p.S376F
TCGA-AZ-4315
COAD
TCGA
VPSSS
DEG_SPOP_SBC_1
0.7982
p.S376F
DO8842
COAD
ICGC
VPSSS
DEG_SPOP_SBC_1
0.7982
p.Q387H
TCGA-DX-A6YS
SARC
TCGA
VPSSS
DEG_SPOP_SBC_1
0.0556
p.Q387H
DO220005
SARC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.0556
p.V373L
DO229041
LICA
ICGC
VPSSS
DEG_SPOP_SBC_1
0.6765
p.Y370N
DO229234
THCA
ICGC
VPSSS
DEG_SPOP_SBC_1
0.25
p.S377T
SIDM00040
Gastric Carcinoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.6005
p.S377T
ACH-002202
Gastric Cancer
CCLE
VPSSS
DEG_SPOP_SBC_1
0.6005
p.S377T
TMK-1
stomach
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.6005
Drug responses associated with RBMS2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14529
Homeobox protein cut-like 2
DEG_SPOP_SBC_1
1413:1417
VPSSS
SPOP
0.9369
More...
O43237
Cytoplasmic dynein 1 light intermediate chain 2
DEG_SPOP_SBC_1
403:407
VPSSS
SPOP
0.9934
More...
O43379
WD repeat-containing protein 62
DEG_SPOP_SBC_1
1045:1049
VPSSS
SPOP
0.9969
More...
O60238
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like
DEG_SPOP_SBC_1
60:64
VPSSS
SPOP
0.9969
More...
O60346
PH domain leucine-rich repeat-containing protein phosphatase 1
DEG_SPOP_SBC_1
1466:1470
VPSSS
SPOP
0.9135
More...
O60353
Frizzled-6
DEG_SPOP_SBC_1
671:675
VPSSS
SPOP
0.997
More...
P20823
Hepatocyte nuclear factor 1-alpha
DEG_SPOP_SBC_1
333:337
VPSSS
SPOP
0.9824
More...
Q04756
Hepatocyte growth factor activator
DEG_SPOP_SBC_1
90:94
VPSSS
SPOP
0.9524
More...
Q14190
Single-minded homolog 2
DEG_SPOP_SBC_1
498:502
VPSSS
SPOP
0.9751
More...
Q14872
Metal regulatory transcription factor 1
DEG_SPOP_SBC_1
36:40
VPSSS
SPOP
0.9447
More...
Q15517
Corneodesmosin
DEG_SPOP_SBC_1
398:402
VPSSS
SPOP
0.9779
More...
Q2M1Z3
Rho GTPase-activating protein 31
DEG_SPOP_SBC_1
969:973
VPSSS
SPOP
0.9317
More...
Q33E94
Transcription factor RFX4
DEG_SPOP_SBC_1
580:584
VPSSS
SPOP
0.9636
More...
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
894:898
VPSSS
SPOP
0.9972
More...
Q5JRX3
Presequence protease, mitochondrial
DEG_SPOP_SBC_1
822:826
VPSSS
SPOP
0.8258
More...
Q5T1R4
Transcription factor HIVEP3
DEG_SPOP_SBC_1
1676:1680
VPSSS
SPOP
0.931
More...
Q6DJT9
Zinc finger protein PLAG1
DEG_SPOP_SBC_1
367:371
VPSSS
SPOP
0.7608
More...
Q6ZU64
Cilia- and flagella-associated protein 65
DEG_SPOP_SBC_1
1733:1737
VPSSS
SPOP
0.9924
More...
Q7L590
Protein MCM10 homolog
DEG_SPOP_SBC_1
596:600
VPSSS
SPOP
0.9945
More...
Q86SU0
Immunoglobulin-like domain-containing receptor 1
DEG_SPOP_SBC_1
424:428
VPSSS
SPOP
0.9587
More...
Q86UU0
B-cell CLL/lymphoma 9-like protein
DEG_SPOP_SBC_1
1219:1223
VPSSS
SPOP
0.9215
More...
Q86YD7
Protein FAM90A1
DEG_SPOP_SBC_1
452:456
VPSSS
SPOP
0.9261
More...
Q8NEZ4
Histone-lysine N-methyltransferase 2C
DEG_SPOP_SBC_1
4002:4006
VPSSS
SPOP
0.603
More...
Q8NI35
InaD-like protein
DEG_SPOP_SBC_1
1335:1339
VPSSS
SPOP
0.9943
More...
Q96CF2
Charged multivesicular body protein 4c
DEG_SPOP_SBC_1
188:192
VPSSS
SPOP
0.9968
More...
Q9H2F5
Enhancer of polycomb homolog 1
DEG_SPOP_SBC_1
802:806
VPSSS
SPOP
0.9538
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
1086:1090
VPSSS
SPOP
0.9575
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4894:4898
VPSSS
SPOP
0.9445
More...
Q9UDV6
Zinc finger protein 212
DEG_SPOP_SBC_1
278:282
VPSSS
SPOP
0.7948
More...
Q9Y566
SH3 and multiple ankyrin repeat domains protein 1
DEG_SPOP_SBC_1
938:942
VPSSS
SPOP
0.8217
More...
Q9Y5Q9
General transcription factor 3C polypeptide 3
DEG_SPOP_SBC_1
53:57
VPSSS
SPOP
0.9944
More...
Q9C0H5
Rho GTPase-activating protein 39
DEG_SPOP_SBC_1
673:677
VPSSS
SPOP
0.98
More...
Q9NX45
Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2
DEG_SPOP_SBC_1
334:338
VPSSS
SPOP
0.9176
More...
D6RIA3
Uncharacterized protein C4orf54
DEG_SPOP_SBC_1
1515:1519
VPSSS
SPOP
0.97
More...
Q15434
RNA-binding motif, single-stranded-interacting protein 2
DEG_SPOP_SBC_1
373:377
VPSSS
SPOP
0.992
More...
Q3B8N5
Prospero homeobox protein 2
DEG_SPOP_SBC_1
45:49
VPSSS
SPOP
0.9929
More...
Q5JWR5
Protein dopey-1
DEG_SPOP_SBC_1
904:908
VPSSS
SPOP
0.6091
More...
Q6DHV5
Protein CC2D2B
DEG_SPOP_SBC_1
173:177
VPSSS
SPOP
0.9766
More...
Q8N9U0
Tandem C2 domains nuclear protein
DEG_SPOP_SBC_1
195:199
VPSSS
SPOP
0.8511
More...
P0CJ78
Zinc finger protein 865
DEG_SPOP_SBC_1
91:95
VPSSS
SPOP
0.9935
More...
Q8N9C0
Immunoglobulin superfamily member 22
DEG_SPOP_SBC_1
788:792
VPSSS
SPOP
0.9873
More...
Q96MR7
Putative uncharacterized protein OBSCN-AS1
DEG_SPOP_SBC_1
19:23
VPSSS
SPOP
0.7429
More...