DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPSSS
Uniprot ID:
Q86YD7
Source protein:
Protein FAM90A1
Source gene:
FAM90A1
Class:
DEG_SPOP_SBC_1
Location:
452:456
E3 ligase:
SPOP
DEGRON score:
0.9261
ASA_SCORE:
61.22
COIL:
0.7756
CONS_SCORE:
0.3498
DSS_SCORE:
0.7013
HELIX:
0.0406
FCONS_SCORE:
0.8457
RIG_SCORE:
0.6358
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P453S
TCGA-19-5956
GBM
TCGA
VPSSS
DEG_SPOP_SBC_1
0.5641
p.P453S
DO13863
GBM
ICGC
VPSSS
DEG_SPOP_SBC_1
0.5641
p.P453S
SIDM00095
Glioblastoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.5641
p.P453S
SNB75
central_nervous_system
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.5641
p.D460N
TCGA-2W-A8YY
CESC
TCGA
VPSSS
DEG_SPOP_SBC_1
0.2222
p.D460N
TCGA-A5-A1OF
UCEC
TCGA
VPSSS
DEG_SPOP_SBC_1
0.2222
p.D460N
TCGA-FR-A8YC
SKCM
TCGA
VPSSS
DEG_SPOP_SBC_1
0.2222
p.D460N
DO223732
CESC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.2222
p.D460N
DO50301
SKCM
ICGC
VPSSS
DEG_SPOP_SBC_1
0.2222
p.D460N
DO42568
UCEC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.2222
p.S455F
TCGA-FS-A4FC
SKCM
TCGA
VPSSS
DEG_SPOP_SBC_1
0.7982
p.S455F
DO37762
SKCM
ICGC
VPSSS
DEG_SPOP_SBC_1
0.7982
p.V445I
TCGA-UF-A7JF
HNSC
TCGA
VPSSS
DEG_SPOP_SBC_1
0.1389
p.V445I
DO52116
HNSC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.1389
p.D460V
DO23482
LINC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.2222
p.Q451H
DO42304
UCEC
ICGC
VPSSS
DEG_SPOP_SBC_1
0.3056
p.S455C
SIDM00206
Glioblastoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.7541
p.S455C
ACH-002231
Brain Cancer
CCLE
VPSSS
DEG_SPOP_SBC_1
0.7541
p.S455C
D-566MG
central_nervous_system
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.7541
p.P453L
SIDM00327
Hodgkin's Lymphoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.6471
p.P453L
ACH-000754
Lymphoma
CCLE
VPSSS
DEG_SPOP_SBC_1
0.6471
p.P453L
L-428
haematopoietic_and_lymphoid_tissue
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.6471
p.L450V
SIDM00760
Small Cell Lung Carcinoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.2778
p.L450V
ACH-000729
Lung Cancer
CCLE
VPSSS
DEG_SPOP_SBC_1
0.2778
p.L450V
NCI-H1963
lung
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.2778
p.V445F
SIDM00638
Cervical Carcinoma
GDSC
VPSSS
DEG_SPOP_SBC_1
0.1389
p.V445F
ACH-001360
Cervical Cancer
CCLE
VPSSS
DEG_SPOP_SBC_1
0.1389
p.V445F
MS751
cervix
COSMIC
VPSSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with FAM90A1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14529
Homeobox protein cut-like 2
DEG_SPOP_SBC_1
1413:1417
VPSSS
SPOP
0.9369
More...
O43237
Cytoplasmic dynein 1 light intermediate chain 2
DEG_SPOP_SBC_1
403:407
VPSSS
SPOP
0.9934
More...
O43379
WD repeat-containing protein 62
DEG_SPOP_SBC_1
1045:1049
VPSSS
SPOP
0.9969
More...
O60238
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like
DEG_SPOP_SBC_1
60:64
VPSSS
SPOP
0.9969
More...
O60346
PH domain leucine-rich repeat-containing protein phosphatase 1
DEG_SPOP_SBC_1
1466:1470
VPSSS
SPOP
0.9135
More...
O60353
Frizzled-6
DEG_SPOP_SBC_1
671:675
VPSSS
SPOP
0.997
More...
P20823
Hepatocyte nuclear factor 1-alpha
DEG_SPOP_SBC_1
333:337
VPSSS
SPOP
0.9824
More...
Q04756
Hepatocyte growth factor activator
DEG_SPOP_SBC_1
90:94
VPSSS
SPOP
0.9524
More...
Q14190
Single-minded homolog 2
DEG_SPOP_SBC_1
498:502
VPSSS
SPOP
0.9751
More...
Q14872
Metal regulatory transcription factor 1
DEG_SPOP_SBC_1
36:40
VPSSS
SPOP
0.9447
More...
Q15517
Corneodesmosin
DEG_SPOP_SBC_1
398:402
VPSSS
SPOP
0.9779
More...
Q2M1Z3
Rho GTPase-activating protein 31
DEG_SPOP_SBC_1
969:973
VPSSS
SPOP
0.9317
More...
Q33E94
Transcription factor RFX4
DEG_SPOP_SBC_1
580:584
VPSSS
SPOP
0.9636
More...
Q4ZHG4
Fibronectin type III domain-containing protein 1
DEG_SPOP_SBC_1
894:898
VPSSS
SPOP
0.9972
More...
Q5JRX3
Presequence protease, mitochondrial
DEG_SPOP_SBC_1
822:826
VPSSS
SPOP
0.8258
More...
Q5T1R4
Transcription factor HIVEP3
DEG_SPOP_SBC_1
1676:1680
VPSSS
SPOP
0.931
More...
Q6DJT9
Zinc finger protein PLAG1
DEG_SPOP_SBC_1
367:371
VPSSS
SPOP
0.7608
More...
Q6ZU64
Cilia- and flagella-associated protein 65
DEG_SPOP_SBC_1
1733:1737
VPSSS
SPOP
0.9924
More...
Q7L590
Protein MCM10 homolog
DEG_SPOP_SBC_1
596:600
VPSSS
SPOP
0.9945
More...
Q86SU0
Immunoglobulin-like domain-containing receptor 1
DEG_SPOP_SBC_1
424:428
VPSSS
SPOP
0.9587
More...
Q86UU0
B-cell CLL/lymphoma 9-like protein
DEG_SPOP_SBC_1
1219:1223
VPSSS
SPOP
0.9215
More...
Q86YD7
Protein FAM90A1
DEG_SPOP_SBC_1
452:456
VPSSS
SPOP
0.9261
More...
Q8NEZ4
Histone-lysine N-methyltransferase 2C
DEG_SPOP_SBC_1
4002:4006
VPSSS
SPOP
0.603
More...
Q8NI35
InaD-like protein
DEG_SPOP_SBC_1
1335:1339
VPSSS
SPOP
0.9943
More...
Q96CF2
Charged multivesicular body protein 4c
DEG_SPOP_SBC_1
188:192
VPSSS
SPOP
0.9968
More...
Q9H2F5
Enhancer of polycomb homolog 1
DEG_SPOP_SBC_1
802:806
VPSSS
SPOP
0.9538
More...
Q9H4A3
Serine/threonine-protein kinase WNK1
DEG_SPOP_SBC_1
1086:1090
VPSSS
SPOP
0.9575
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4894:4898
VPSSS
SPOP
0.9445
More...
Q9UDV6
Zinc finger protein 212
DEG_SPOP_SBC_1
278:282
VPSSS
SPOP
0.7948
More...
Q9Y566
SH3 and multiple ankyrin repeat domains protein 1
DEG_SPOP_SBC_1
938:942
VPSSS
SPOP
0.8217
More...
Q9Y5Q9
General transcription factor 3C polypeptide 3
DEG_SPOP_SBC_1
53:57
VPSSS
SPOP
0.9944
More...
Q9C0H5
Rho GTPase-activating protein 39
DEG_SPOP_SBC_1
673:677
VPSSS
SPOP
0.98
More...
Q9NX45
Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2
DEG_SPOP_SBC_1
334:338
VPSSS
SPOP
0.9176
More...
D6RIA3
Uncharacterized protein C4orf54
DEG_SPOP_SBC_1
1515:1519
VPSSS
SPOP
0.97
More...
Q15434
RNA-binding motif, single-stranded-interacting protein 2
DEG_SPOP_SBC_1
373:377
VPSSS
SPOP
0.992
More...
Q3B8N5
Prospero homeobox protein 2
DEG_SPOP_SBC_1
45:49
VPSSS
SPOP
0.9929
More...
Q5JWR5
Protein dopey-1
DEG_SPOP_SBC_1
904:908
VPSSS
SPOP
0.6091
More...
Q6DHV5
Protein CC2D2B
DEG_SPOP_SBC_1
173:177
VPSSS
SPOP
0.9766
More...
Q8N9U0
Tandem C2 domains nuclear protein
DEG_SPOP_SBC_1
195:199
VPSSS
SPOP
0.8511
More...
P0CJ78
Zinc finger protein 865
DEG_SPOP_SBC_1
91:95
VPSSS
SPOP
0.9935
More...
Q8N9C0
Immunoglobulin superfamily member 22
DEG_SPOP_SBC_1
788:792
VPSSS
SPOP
0.9873
More...
Q96MR7
Putative uncharacterized protein OBSCN-AS1
DEG_SPOP_SBC_1
19:23
VPSSS
SPOP
0.7429
More...