Search results: The pahtway p3400 has 210 genes in the original annotation. Currently, there are 123 genes in SZGR 2.0 (with evidence in schizophrenia) that are present at this pathway.

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Gene ID Symbol Synonyms Official Full Name Location SZ group ? Functional group ?
50674NEUROG3Atoh5 | Math4B | NGN-3 | bHLHa7 | ngn3neurogenin 310q21.3CV:GWASdb
CV:PGCnp
GO_Annotation
4791NFKB2CVID10 | H2TF1 | LYT-10 | LYT10 | NF-kB2 | p100 | p49/p100 | p52nuclear factor of kappa light polypeptide gene enhancer in B-cells 210q24CV:PGCnp
DMG:Nishioka_2013
GO_Annotation
Network
8861LDB1CLIM2 | NLILIM domain binding 110q24-q25CV:PGCnp
DMG:Wockner_2014
GO_Annotation
64077LHPPHDHD2Bphospholysine phosphohistidine inorganic pyrophosphate phosphatase10q26.13CV:PGCnp
DMG:Wockner_2014
GSMA_IIA
6207RPS13S13ribosomal protein S1311p15CV:PGCnp
DMG:Jaffe_2016
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
9415FADS2D6D | DES6 | FADSD6 | LLCDL2 | SLL0262 | TU13fatty acid desaturase 211q12.2CV:PGCnp
DNM:Fromer_2014
PMID:cooccur
CompositeSet
79080CCDC86-coiled-coil domain containing 8611q12.2CV:PGCnp
DMG:Wockner_2014
PMID:cooccur
3177SLC29A2DER12 | ENT2 | HNP36solute carrier family 29 member 211q13CV:PGCnp
26472PPP1R14BPHI-1 | PLCB3N | PNG | SOM172protein phosphatase 1 regulatory inhibitor subunit 14B11q13CV:PGCnp
84153RNASEH2CAGS3 | AYP1ribonuclease H2 subunit C11q13.1CV:PGCnp
23365ARHGEF12LARG | PRO2792Rho guanine nucleotide exchange factor 1211q23.3CV:PGCnp
DMG:Wockner_2014
GSMA_I
CompositeSet
Darnell FMRP targets
6472SHMT2GLYA | HEL-S-51e | SHMTserine hydroxymethyltransferase 212q12-q14CV:GWAScat
CV:PGC128
CV:PGCnp
8086AAASAAA | AAASb | ADRACALA | ADRACALIN | ALADIN | GL003aladin WD repeat nucleoporin12q13CV:PGCnp
DMG:Nishioka_2013
4234METTL1C12orf1 | TRM8 | TRMT8 | YDL201wmethyltransferase like 112q13Network
8914TIMELESSTIM | TIM1 | hTIMtimeless circadian clock12q13.3Association
CV:PGCnp
DMG:Wockner_2014
PMID:cooccur
Ascano FMRP targets
1019CDK4CMM3 | PSK-J3cyclin-dependent kinase 412q14CV:PGCnp
DMG:Jaffe_2016
GO_Annotation
Network
PMID:cooccur
4598MVKLRBP | MK | MVLK | POROK3mevalonate kinase12q24CV:PGCnp
121642ALKBH2ABH2alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase12q24.11CV:PGCnp
5426POLECRCS12 | FILS | POLE1polymerase (DNA) epsilon, catalytic subunit12q24.3CV:PGCnp
PMID:cooccur
Ascano FMRP targets
54841BIVM-basic, immunoglobulin-like variable motif containing13q33.1CV:PGCnp
DMG:Nishioka_2013
115708TRMT61AC14orf172 | GCD14 | Gcd14p | TRM61 | hTRM61tRNA methyltransferase 61A14q32CV:PGCnp
64919BCL11BATL1 | ATL1-alpha | ATL1-beta | ATL1-delta | ATL1-gamma | CTIP-2 | CTIP2 | RIT1 | ZNF856B | hRIT1-alphaB-cell CLL/lymphoma 11B14q32.2CV:GWAScat
CV:PGC128
CV:PGCnp
DMG:Wockner_2014
51550CINP-cyclin-dependent kinase 2 interacting protein14q32.31CV:PGCnp
PMID:cooccur
9990SLC12A6ACCPN | KCC3 | KCC3A | KCC3Bsolute carrier family 12 member 615q13CV:PGCnp
GO_Annotation
PMID:cooccur
CompositeSet
Darnell FMRP targets
701BUB1BBUB1beta | BUBR1 | Bub1A | MAD3L | MVA1 | SSK1 | hBUBR1BUB1 mitotic checkpoint serine/threonine kinase B15q15CV:PGCnp
DMG:Jaffe_2016
28232SLCO3A1OATP-D | OATP3A1 | OATPD | SLC21A11solute carrier organic anion transporter family member 3A115q26CV:GWAScat
CV:PGCnp
PMID:cooccur
79874RABEP2FRArabaptin, RAB GTPase binding effector protein 216p11.2CV:PGCnp
DMG:Wockner_2014
GSMA_IIE
INTRACELLULAR TRAFFICKING
2072ERCC4ERCC11 | FANCQ | RAD1 | XFEPS | XPFexcision repair cross-complementation group 416p13.12CV:PGCnp
GSMA_IIE
51330TNFRSF12ACD266 | FN14 | TWEAKRtumor necrosis factor receptor superfamily member 12A16p13.3DMG:Wockner_2014
GO_Annotation
1387CREBBPCBP | KAT3A | RSTSCREB binding protein16p13.3CV:PGCnp
Network
PMID:cooccur
CompositeSet
Darnell FMRP targets
Chromatin Remodeling Genes
9894TELO2CLK2 | TEL2telomere maintenance 216p13.3DMG:Wockner_2014
55239OGFOD1TPA12-oxoglutarate and iron dependent oxygenase domain containing 116q12.2CV:PGCnp
DMG:vanEijk_2014
29109FHOD1FHOSformin homology 2 domain containing 116q22CV:PGCnp
DMG:Jaffe_2016
23536ADAT1HADAT1adenosine deaminase, tRNA specific 116q23.1CV:PGCnp
23300ATMINASCIZ | ZNF822ATM interactor16q23.2DMG:Jaffe_2016CompositeSet
Darnell FMRP targets
2622GAS8CILD33 | DRC4 | GAS11growth arrest specific 816q24.3CV:PGCnp
2175FANCAFA | FA-H | FA1 | FAA | FACA | FAH | FANCHFanconi anemia complementation group A16q24.3CV:PGCnp
6470SHMT1CSHMT | SHMTserine hydroxymethyltransferase 1 (soluble)17p11.2CV:PGCnp
PMID:cooccur
5598MAPK7BMK1 | ERK4 | ERK5 | PRKM7mitogen-activated protein kinase 717p11.2CV:PGCnpAscano FMRP targets
1819DRG2-developmentally regulated GTP binding protein 217p11.2CV:PGCnp
124944C17orf49BAP18 | HEPISchromosome 17 open reading frame 4917p13.1DNM:Xu_2012CompositeSet
7157TP53BCC7 | LFS1 | P53 | TRP53tumor protein p5317p13.1Association
Core
CV:PGCnp
GO_Annotation
GR_COR
GR_Ng
GR_WM
Network
PMID:cooccur
4830NME1AWD | GAAD | NB | NBS | NDKA | NDPK-A | NDPKA | NM23 | NM23-H1NME/NM23 nucleoside diphosphate kinase 117q21.3CV:PGCnpCELL METABOLISM
CompositeSet
8313AXIN2AXIL | ODCRCSaxin 217q24.1CV:PGCnp
220134SKA1C18orf24spindle and kinetochore associated complex subunit 118q21.1CV:PGCnp
DMG:Wockner_2014
56342PPANBXDC3 | SSF | SSF-1 | SSF1 | SSF2peter pan homolog (Drosophila)19p13DMG:Nishioka_2013
10755GIPC1C19orf3 | GIPC | GLUT1CBP | Hs.6454 | IIP-1 | NIP | RGS19IP1 | SEMCAP | SYNECTIIN | SYNECTIN | TIP-2GIPC PDZ domain containing family member 119p13.1CV:PGCnp
GO_Annotation
Network
PMID:cooccur
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.humanPSD
G2Cdb.humanPSP
Potential synaptic genes
84705GTPBP3COXPD23 | GTPBG3 | MSS1 | MTGP1 | THDF1GTP binding protein 3 (mitochondrial)19p13.11CV:PGCnp
DMG:vanEijk_2014
DNM:Fromer_2014
CompositeSet
5886RAD23AHHR23A | HR23ARAD23 homolog A, nucleotide excision repair protein19p13.2CV:PGCnp
7064THOP1EP24.15 | MEPD_HUMAN | MP78 | TOPthimet oligopeptidase 119p13.3CV:PGCnp
DMG:Wockner_2014
53615MBD3-methyl-CpG binding domain protein 319p13.3CV:PGCnp
PMID:cooccur
Ascano FMRP targets
Chromatin Remodeling Genes
81890QTRT1FP3235 | TGT | TGUTqueuine tRNA-ribosyltransferase catalytic subunit 119p13.3DMG:Wockner_2014
56931DUS3LDUS3dihydrouridine synthase 3 like19p13.3CV:PGCnp
DMG:Jaffe_2016
Ascano FMRP targets
2067ERCC1COFS4 | RAD10 | UV20excision repair cross-complementation group 119q13.32DMG:Jaffe_2016
53635PTOV1ACID2 | PTOV-1prostate tumor overexpressed 119q13.33CV:PGCnp
DMG:vanEijk_2014
26227PHGDH3-PGDH | 3PGDH | HEL-S-113 | NLS | NLS1 | PDG | PGAD | PGD | PGDH | PHGDHD | SERAphosphoglycerate dehydrogenase1p12CV:PGCnp
GO_Annotation
GSMA_I
GSMA_IIA
PMID:cooccur
CELL METABOLISM
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
CompositeSet
23576DDAH1DDAH | HEL-S-16dimethylarginine dimethylaminohydrolase 11p22CV:PGCnp
DMG:Nishioka_2013
DMG:Wockner_2014
NEUROTRANSMITTER METABOLISM
CompositeSet
1486CTBSCTBchitobiase1p22CV:PGCnp
PMID:cooccur
7804LRP8APOER2 | HSZ75190 | LRP-8 | MCI1LDL receptor related protein 81p34CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
Network
PMID:cooccur
CompositeSet
Darnell FMRP targets
Potential synaptic genes
1802DPH2DPH2L2DPH2 homolog1p34CV:PGCnp
DMG:Jaffe_2016
126661CCDC163PC1orf231coiled-coil domain containing 163, pseudogene1p34.1DMG:Wockner_2014
8761PABPC4APP-1 | APP1 | PABP4 | iPABPpoly(A) binding protein, cytoplasmic 4 (inducible form)1p34.2CV:PGCnpG2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
6723SRMPAPT | SPDSY | SPS1 | SRML1spermidine synthase1p36-p22CV:PGCnp
DMG:Jaffe_2016
PMID:cooccur
2048EPHB2CAPB | DRT | EK5 | EPHT3 | ERK | Hek5 | PCBC | Tyro5EPH receptor B21p36.1-p35CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
GO_Annotation
Network
Potential synaptic genes
3104ZBTB48HKR3 | ZNF855 | pp9964zinc finger and BTB domain containing 481p36.3CV:PGCnp
23380SRGAP2ARHGAP34 | FNBP2 | SRGAP2A | SRGAP3SLIT-ROBO Rho GTPase activating protein 21q32.1CV:PGCnp
PMID:cooccur
Ascano FMRP targets
10528NOP56NOL5A | SCA36NOP56 ribonucleoprotein20p13CV:PGCnp
1789DNMT3BICF | ICF1 | M.HsaIIIBDNA (cytosine-5-)-methyltransferase 3 beta20q11.2CV:PGCnp
PMID:cooccur
Chromatin Remodeling Genes
60436TGIF2-TGFB induced factor homeobox 220q11.23CV:PGCnp
DMG:Wockner_2014
655BMP7OP-1bone morphogenetic protein 720q13CV:PGCnp
DMG:Jaffe_2016
DMG:Wockner_2014
Expression
GO_Annotation
54093SETD4C21orf18 | C21orf27SET domain containing 421q22.13CV:GWASdb
CV:PGCnp
DMG:Jaffe_2016
10785WDR4TRM82 | TRMT82WD repeat domain 421q22.3CV:PGCnp
DMG:vanEijk_2014
7485WRBCHD5 | GET1tryptophan rich basic protein21q22.3CV:PGCnp
DMG:Wockner_2014
637BIDFP497BH3 interacting domain death agonist22q11.1Expression
GO_Annotation
GSMA_I
PMID:cooccur
7290HIRADGCR1 | TUP1 | TUPLE1histone cell cycle regulator22q11.21CNV:YES
CV:PGCnp
GSMA_I
Network
PMID:cooccur
Ascano FMRP targets
10587TXNRD2SELZ | TR | TR-BETA | TR3 | TRXR2thioredoxin reductase 222q11.21CNV:YES
CV:GWASdb
CV:PGCnp
GSMA_I
PMID:cooccur
402055SRRDHC/HCC | SRR1LSRR1 domain containing22q12.1CV:PGCnp
PMID:cooccur
5372PMM1Sec53phosphomannomutase 122q13.2CV:PGCnp
84058WDR54-WD repeat domain 542p13.1DMG:vanEijk_2014
10322SMYD5NN8-4AG | RAI15 | RRG1 | ZMYND23SMYD family member 52p13.2CV:PGCnp
10574CCT7CCTETA | CCTH | NIP7-1 | TCP1ETAchaperonin containing TCP1 subunit 72p13.2CV:PGCnpRNA AND PROTEIN SYNTHESIS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
Ascano FMRP targets
53335BCL11ABCL11A-L | BCL11A-S | BCL11A-XL | BCL11a-M | CTIP1 | EVI9 | HBFQTL5 | ZNF856B-cell CLL/lymphoma 11A2p16.1CV:GWASdb
CV:PGCnp
PMID:cooccur
790CADCDG1Zcarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase2p22-p21CV:PGCnp
GO_Annotation
Network
PMID:cooccur
Ascano FMRP targets
55622TTC27-tetratricopeptide repeat domain 272p22.3CV:GWASdb
CV:PGCnp
10056FARSBFARSLB | FRSB | HSPC173 | PheHB | PheRSphenylalanyl-tRNA synthetase beta subunit2q36.1CV:GWAScat
CV:PGCnp
DMG:Jaffe_2016
GSMA_IIA
GSMA_IIE
CompositeSet
728294D2HGDHD2HGDD-2-hydroxyglutarate dehydrogenase2q37.3CV:PGCnp
DMG:vanEijk_2014
1841DTYMKCDC8 | PP3731 | TMPK | TYMKdeoxythymidylate kinase2q37.3CV:PGCnp
DMG:Jaffe_2016
7869SEMA3BLUCA-1 | SEMA5 | SEMAA | SemA | semaVsemaphorin 3B3p21.3DMG:Wockner_2014
GO_Annotation
80746TSEN2PCH2B | SEN2 | SEN2LtRNA splicing endonuclease subunit 23p25.2CV:PGCnp
DMG:Wockner_2014
GSMA_I
79663HSPBAP1PASS1HSPB1 associated protein 13q21.1CV:PGCnp
7468WHSC1MMSET | NSD2 | REIIBP | TRX5 | WHSWolf-Hirschhorn syndrome candidate 14p16.3CV:PGCnp
DMG:Wockner_2014
Chromatin Remodeling Genes
6002RGS12-regulator of G-protein signaling 124p16.3CV:PGCnp
DMG:Wockner_2014
DNM:Guipponi_2014
DNM:Xu_2012
Network
PMID:cooccur
CompositeSet
54433GAR1NOLA1GAR1 ribonucleoprotein4q25DMG:Wockner_2014
26064RAI14NORPEG | RAI13retinoic acid induced 145p13.3-p13.2CV:PGCnp
DNM:McCarthy_2014
Network
84327ZBED3-zinc finger BED-type containing 35q13.3CV:PGCnp
DMG:Jaffe_2016
9456HOMER1HOMER | HOMER1A | HOMER1B | HOMER1C | SYN47 | Ves-1homer scaffolding protein 15q14.2CV:PGCnp
GO_Annotation
PMID:cooccur
INTRACELLULAR SIGNAL TRANSDUCTION
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.human_mGluR5
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
Potential synaptic genes
55568GALNT10GALNACT10 | PPGALNACT10 | PPGANTASE10polypeptide N-acetylgalactosaminyltransferase 105q33.2CV:GWAScat
CV:GWASdb
CV:PGC128
CV:PGCnp
GSMA_I
GSMA_IIA
GSMA_IIE
Ascano FMRP targets
55651NHP2DKCB2 | NHP2P | NOLA2NHP2 ribonucleoprotein5q35.3CV:PGCnp
DMG:Wockner_2014
7407VARSG7A | VARS1 | VARS2valyl-tRNA synthetase6p21.3CV:PGCnp
GSMA_I
Network
PMID:cooccur
Ascano FMRP targets
6204RPS10DBA9 | S10ribosomal protein S106p21.31CV:PGCnp
DMG:Wockner_2014
GSMA_I
GSMA_IIE
G2Cdb.humanPSD
G2Cdb.humanPSP
6659SOX4EVI16SRY-box 46p22.3CV:PGCnp
DMG:Jaffe_2016
DMG:Wockner_2014
GSMA_I
10345TRDNCPVT5 | TDN | TRISKtriadin6q22.31CV:PGCnp
GO_Annotation
257218SHPRHbA545I5.2SNF2 histone linker PHD RING helicase6q24.3CV:PGCnp
DMG:Jaffe_2016
Ascano FMRP targets
3205HOXA9ABD-B | HOX1 | HOX1.7 | HOX1Ghomeobox A97p15.2DMG:Wockner_2014
3955LFNGSCDO3LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase7p22.2CV:PGCnp
DMG:Wockner_2014
55695NSUN5NOL1 | NOL1R | NSUN5A | WBSCR20 | WBSCR20A | p120 | p120(NOL1)NOP2/Sun RNA methyltransferase family member 57q11.23CNV:YES
4176MCM7CDC47 | MCM2 | P1.1-MCM3 | P1CDC47 | P85MCM | PNAS146 | PPP1R104minichromosome maintenance complex component 77q21.3-q22.1DMG:Nishioka_2013
DMG:vanEijk_2014
Network
PMID:cooccur
Ascano FMRP targets
55915LANCL2GPR69B | TASPLanC like 27q31.1-q31.33CV:PGCnp
DMG:Jaffe_2016
INTRACELLULAR SIGNAL TRANSDUCTION
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
168850ZNF800-zinc finger protein 8007q31.33CV:PGCnp
84928TMEM209NET31transmembrane protein 2097q32.2CV:PGCnp
57604KIAA1456C8orf79 | TRM9LKIAA14568p22CV:GWASdb
CV:PGCnp
DMG:Jaffe_2016
8323FZD6FZ-6 | FZ6 | HFZ6 | NDNC10frizzled class receptor 68q22.3-q23.1CV:GWASdb
CV:PGCnp
64798DEPTORDEP.6 | DEPDC6DEP domain containing MTOR-interacting protein8q24.12CV:PGCnp
DMG:Jaffe_2016
10221TRIB1C8FW | GIG-2 | GIG2 | SKIP1 | TRB-1 | TRB1tribbles pseudokinase 18q24.13CV:PGCnp
DMG:Jaffe_2016
4609MYCMRTL | MYCC | bHLHe39 | c-Mycv-myc avian myelocytomatosis viral oncogene homolog8q24.21CV:PGCnp
DMG:Jaffe_2016
Expression
Network
PMID:cooccur
54512EXOSC4RRP41 | RRP41A | Rrp41p | SKI6 | Ski6p | hRrp41p | p12Aexosome component 48q24.3DMG:Wockner_2014
Expression
100130274CCDC166-coiled-coil domain containing 1668q24.3CV:PGCnp
10280SIGMAR1ALS16 | DSMA2 | OPRS1 | SIG-1R | SR-BP | SR-BP1 | SRBP | hSigmaR1 | sigma1Rsigma non-opioid intracellular receptor 19p13.3ADT:Sun_2012
Association
CV:PGCnp
GO_Annotation
PMID:cooccur
340485ACER2ALKCDase2 | ASAH3Lalkaline ceramidase 29p22.1CV:GWASdb
CV:PGCnp
4920ROR2BDB | BDB1 | NTRKR2receptor tyrosine kinase-like orphan receptor 29q22CV:PGCnp
DMG:Wockner_2014
GO_Annotation
Ascano FMRP targets
10585POMT1LGMD2K | MDDGA1 | MDDGB1 | MDDGC1 | RTprotein O-mannosyltransferase 19q34.1CV:PGCnp
DNM:Fromer_2014
CompositeSet
6837MED22MED24 | SURF5 | surf-5mediator complex subunit 229q34.2CV:PGCnp
170302ARXCT121 | EIEE1 | ISSX | MRX29 | MRX32 | MRX33 | MRX36 | MRX38 | MRX43 | MRX54 | MRX76 | MRX87 | MRXS1 | PRTSaristaless related homeoboxXp21.3CV:PGCnp
GO_Annotation
PMID:cooccur
Potential synaptic genes